##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002004_Nocton-Corn_CGTACG_L003_R1_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.80383875 34.0 31.0 34.0 31.0 34.0 2 33.03828525 34.0 31.0 34.0 31.0 34.0 3 33.07884375 34.0 33.0 34.0 31.0 34.0 4 36.44795525 37.0 37.0 37.0 35.0 37.0 5 36.390861 37.0 37.0 37.0 35.0 37.0 6 36.35394025 37.0 37.0 37.0 35.0 37.0 7 36.3456865 37.0 37.0 37.0 35.0 37.0 8 36.3221725 37.0 37.0 37.0 35.0 37.0 9 38.11808725 39.0 39.0 39.0 37.0 39.0 10-14 38.3941042 39.4 38.8 39.4 37.0 39.4 15-19 39.53308565 41.0 40.0 41.0 37.0 41.0 20-24 39.3275538 41.0 39.0 41.0 36.0 41.0 25-29 38.8967051 40.0 38.4 41.0 35.0 41.0 30-34 38.1509959 40.0 37.2 41.0 33.8 41.0 35-39 37.16068545 38.8 35.2 40.6 32.8 41.0 40-44 36.194573150000004 37.0 35.0 40.0 31.8 41.0 45-49 35.616111450000005 35.2 35.0 39.2 32.0 41.0 50-54 34.76736045 35.0 35.0 37.0 31.0 40.4 55-59 34.13426785 35.0 34.2 35.2 30.8 39.2 60-64 33.6082485 35.0 34.0 35.0 30.0 37.2 65-69 33.201497599999996 35.0 33.0 35.0 29.0 35.8 70-74 32.881237850000005 35.0 33.0 35.0 29.0 35.0 75-79 32.206992650000004 34.4 32.6 35.0 27.0 35.0 80-84 32.433847300000004 35.0 33.0 35.0 27.0 35.0 85-89 32.09369554999999 35.0 33.0 35.0 27.0 35.0 90-94 31.676084549999995 35.0 33.0 35.0 25.4 35.0 95-99 31.0473534 35.0 32.6 35.0 23.6 35.0 100-101 29.85512325 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 28.0 3 8.0 4 32.0 5 94.0 6 286.0 7 843.0 8 2035.0 9 3109.0 10 4071.0 11 4645.0 12 4852.0 13 5075.0 14 5479.0 15 5820.0 16 6468.0 17 7391.0 18 8083.0 19 8746.0 20 9533.0 21 10787.0 22 12597.0 23 15394.0 24 19118.0 25 23891.0 26 29714.0 27 37475.0 28 46584.0 29 57930.0 30 72903.0 31 93911.0 32 123178.0 33 171288.0 34 275947.0 35 653826.0 36 1350300.0 37 704687.0 38 192912.0 39 30838.0 40 122.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 30.449784420839325 22.566185915428154 19.342762988947616 27.6412666747849 2 30.478525 22.980475 22.782574999999998 23.758425 3 28.635925 21.779799999999998 22.025624999999998 27.55865 4 30.62915 20.6662 20.18585 28.5188 5 30.820225 19.778200000000002 19.543374999999997 29.8582 6 30.015249999999998 19.230825 18.660525 32.0934 7 31.901875 19.0673 19.23265 29.798175 8 29.638575 19.32675 19.831825 31.202849999999998 9 30.277874999999998 18.420425 19.822725 31.478975 10-14 30.552390000000003 19.312905 19.46172 30.672985000000004 15-19 30.61348 19.188805000000002 19.365925 30.831789999999998 20-24 30.593446732526413 19.224480281476616 19.400663170876005 30.78140981512097 25-29 30.704535410171523 19.26723693316498 19.317932214523793 30.710295442139703 30-34 30.752769152720656 19.172108897914285 19.24240379433373 30.832718155031337 35-39 30.69233444079668 19.235924296191058 19.29832474375013 30.77341651926213 40-44 30.767730757980683 19.22791920939407 19.252034390257926 30.752315642367318 45-49 30.79166 19.136485 19.216115000000002 30.855739999999997 50-54 30.708593346327355 19.214151506887863 19.275036622569583 30.802218524215196 55-59 30.79287 19.229305 19.237275 30.74055 60-64 30.798336054008775 19.169980668924534 19.189017144181594 30.8426661328851 65-69 30.724979536416175 19.22612592723817 19.282347641953955 30.766546894391706 70-74 30.818630000000002 19.252475 19.21041 30.718485 75-79 30.812575 19.17943 19.187325 30.82067 80-84 30.746975483962068 19.207618149306292 19.257569652846552 30.787836713885085 85-89 30.83645636757891 19.25515908319331 19.195667556447184 30.712716992780592 90-94 30.88176186397434 19.143282007195367 19.159824518322544 30.815131610507752 95-99 30.80301664416788 19.210709648848923 19.215470097283163 30.77080360970003 100-101 31.112796678676336 19.196224273097943 19.069273368572752 30.621705679652965 >>END_MODULE >>Per base GC content warn #Base %GC 1 58.09105109562422 2 54.23694999999999 3 56.194575 4 59.14795 5 60.678425000000004 6 62.10865 7 61.70005 8 60.841425 9 61.75685 10-14 61.22537500000001 15-19 61.445269999999994 20-24 61.37485654764738 25-29 61.41483085231123 30-34 61.58548730775198 35-39 61.46575096005882 40-44 61.52004640034801 45-49 61.6474 50-54 61.51081187054256 55-59 61.53342000000001 60-64 61.641002186893864 65-69 61.49152643080787 70-74 61.537115 75-79 61.633245 80-84 61.53481219784715 85-89 61.54917336035951 90-94 61.69689347448208 95-99 61.573820253867915 100-101 61.7345023583293 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 28.0 1 21.5 2 16.5 3 15.0 4 15.5 5 17.5 6 18.0 7 24.0 8 37.5 9 46.0 10 47.0 11 62.0 12 82.5 13 110.0 14 165.5 15 225.0 16 279.5 17 366.5 18 475.0 19 606.0 20 798.5 21 1042.5 22 1366.5 23 1770.5 24 2228.5 25 2790.5 26 3471.5 27 4298.0 28 5346.5 29 6535.0 30 7799.5 31 9216.5 32 10690.5 33 12246.5 34 13835.0 35 15215.0 36 16594.5 37 18026.0 38 19137.5 39 20314.0 40 21460.0 41 22403.0 42 23565.0 43 24755.0 44 26159.0 45 27831.0 46 30043.0 47 32983.5 48 36539.5 49 41039.5 50 46527.5 51 52825.0 52 60064.5 53 68338.5 54 77109.0 55 86922.0 56 97456.5 57 107676.0 58 118807.5 59 130900.5 60 142610.5 61 154725.5 62 167003.5 63 177795.0 64 187553.0 65 194687.5 66 197925.5 67 197572.0 68 193709.0 69 184795.0 70 170989.5 71 154612.0 72 135292.5 73 114343.5 74 92811.0 75 71924.0 76 53500.0 77 37711.0 78 25040.5 79 15738.0 80 9198.5 81 4983.5 82 2605.5 83 1433.0 84 874.0 85 536.5 86 363.0 87 268.0 88 192.5 89 134.0 90 98.0 91 68.5 92 49.5 93 35.5 94 25.0 95 11.0 96 6.0 97 3.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.019325000000000002 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.00164 25-29 5.55E-4 30-34 0.04253 35-39 0.00873 40-44 7.5E-4 45-49 0.0 50-54 1.9E-4 55-59 0.0 60-64 0.034015000000000004 65-69 0.029730000000000003 70-74 0.0 75-79 0.0 80-84 0.00301 85-89 0.02778 90-94 0.045405 95-99 0.00942 100-101 7.125E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.3194217416733038 #Duplication Level Relative count 1 100.0 2 0.28534175818665064 3 0.005014793641241663 4 0.0015044380923724988 5 0.0010029587282483325 6 0.0 7 5.014793641241662E-4 8 5.014793641241662E-4 9 5.014793641241662E-4 10++ 0.0015044380923724988 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 363440 3.4722724 3.7356915 10-14 AAAAA 356235 3.4163415 3.7798522 65-69 >>END_MODULE