##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L003_R2_011.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3956744 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.40933707108673 34.0 31.0 34.0 31.0 34.0 2 32.546221843010315 34.0 31.0 34.0 31.0 34.0 3 32.61274118315463 34.0 31.0 34.0 31.0 34.0 4 36.032737018113885 37.0 37.0 37.0 35.0 37.0 5 36.03490824779162 37.0 37.0 37.0 35.0 37.0 6 36.034444735368275 37.0 37.0 37.0 35.0 37.0 7 36.028656895669776 37.0 37.0 37.0 35.0 37.0 8 35.97819217012776 37.0 37.0 37.0 35.0 37.0 9 37.712181531077064 39.0 38.0 39.0 35.0 39.0 10-14 37.969486982225796 39.4 38.2 39.4 35.2 39.4 15-19 39.046757232714576 41.0 39.0 41.0 35.8 41.0 20-24 38.79634553056756 40.6 38.6 41.0 35.0 41.0 25-29 38.39002770965218 40.0 38.0 41.0 34.2 41.0 30-34 37.740025435054676 39.8 36.8 41.0 33.0 41.0 35-39 36.77256208640235 38.6 35.0 40.6 31.6 41.0 40-44 35.854792829659935 36.6 35.0 40.0 31.0 41.0 45-49 34.9057182875617 35.0 34.6 38.4 30.4 40.8 50-54 33.58528962197201 34.8 33.2 36.0 28.0 39.2 55-59 33.649780779347864 35.0 34.0 35.0 29.8 38.0 60-64 33.34525276338322 35.0 34.0 35.0 29.4 36.2 65-69 33.050135616557455 35.0 33.8 35.0 29.0 35.0 70-74 32.778168868140064 35.0 33.0 35.0 28.8 35.0 75-79 32.5370892835119 35.0 33.0 35.0 27.2 35.0 80-84 32.258071080666326 35.0 33.0 35.0 27.0 35.0 85-89 31.977021308429357 35.0 33.0 35.0 26.6 35.0 90-94 31.599403044523473 35.0 33.0 35.0 24.4 35.0 95-99 31.04077408091097 35.0 32.6 35.0 23.4 35.0 100-101 29.904164510011263 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 6439.0 3 1232.0 4 1665.0 5 2100.0 6 2751.0 7 3683.0 8 4233.0 9 4901.0 10 5160.0 11 5473.0 12 5721.0 13 5587.0 14 5651.0 15 5580.0 16 5989.0 17 6736.0 18 7624.0 19 8760.0 20 10190.0 21 12296.0 22 15005.0 23 18313.0 24 22535.0 25 27557.0 26 33421.0 27 40714.0 28 49701.0 29 61639.0 30 76138.0 31 96569.0 32 124973.0 33 172791.0 34 277039.0 35 648487.0 36 1354145.0 37 695572.0 38 115051.0 39 15275.0 40 48.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.22933215205339 22.72874151207879 13.56431502956234 26.477611306305487 2 31.378255667296113 24.096312426734524 19.133780857470274 25.391651048499085 3 28.700773962887205 19.635926441919914 20.923344551286103 30.73995504390678 4 30.99712528159346 19.350849647423498 19.420631730115268 30.231393340867776 5 31.41724404516016 20.618365919845726 19.82539851883013 28.138991516163987 6 29.69482230007257 19.020946035955806 17.605989651728514 33.6782420122431 7 32.90611680303254 18.719336643540732 19.015788601911524 29.358757951515198 8 28.623333096440206 19.5205670867431 19.778890191941603 32.07720962487509 9 30.715700258795337 17.852299727039345 19.139193745404175 32.29280626876114 10-14 30.885517406259353 19.243084580792413 19.099805811378797 30.771592201569437 15-19 31.054128432155686 18.807543919805713 18.95143642963322 31.18689121840538 20-24 30.994194267922165 18.868727842866498 18.97551840721585 31.16155948199549 25-29 31.15264183226482 18.99713481101225 18.881053930866475 30.969169425856453 30-34 31.281255939952796 18.741976718191474 18.70976096782971 31.267006374026025 35-39 31.092871621455938 18.822432674587848 18.86634409678047 31.218351607175748 40-44 31.25424092466136 18.890204552226606 18.76866550316236 31.086889019949677 45-49 31.37385559133483 18.65606981783239 18.63246617978834 31.33760841104444 50-54 31.158767697155053 18.76081326741937 18.808225942377472 31.272193093048106 55-59 31.289550312969965 18.840949258569626 18.747739973088713 31.121760455371692 60-64 31.37959406987666 18.641312133149466 18.623833010793483 31.355260786180395 65-69 31.17003778864642 18.763083990270786 18.786097862282723 31.280780358800065 70-74 31.291428395814876 18.855412311246596 18.738669640026075 31.114489652912454 75-79 31.398956129938743 18.661009733546948 18.604152612035776 31.335881524478538 80-84 31.182874024614225 18.78768298996158 18.780873873064614 31.248569112359583 85-89 31.31074907673686 18.83513413157562 18.73945403559326 31.11466275609425 90-94 31.4102473376777 18.631090182313727 18.611553680141206 31.347108799867364 95-99 31.22493599852313 18.753170754787753 18.758483569904413 31.263409676784708 100-101 31.43499731078436 18.93564181265266 18.73062703207648 30.898733844486504 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.706943458358865 2 56.7699067157952 3 59.44072900679398 4 61.22851862246124 5 59.556235561324144 6 63.37306431231568 7 62.26487475454774 8 60.7005427213153 9 63.008506527556484 10-14 61.65710960782879 15-19 62.24101965056107 20-24 62.15575374991765 25-29 62.12181125812128 30-34 62.54826231397882 35-39 62.31122322863168 40-44 62.341129944611026 45-49 62.711464002379266 50-54 62.43096079020316 55-59 62.411310768341664 60-64 62.734854856057055 65-69 62.45081814744648 70-74 62.40591804872733 75-79 62.73483765441728 80-84 62.431443136973805 85-89 62.42541183283111 90-94 62.75735613754506 95-99 62.48834567530783 100-101 62.33373115527087 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 143.0 1 101.0 2 55.0 3 41.5 4 29.5 5 26.0 6 29.5 7 36.0 8 44.0 9 46.5 10 50.5 11 69.0 12 81.5 13 91.5 14 116.5 15 134.5 16 155.5 17 191.0 18 225.5 19 272.5 20 361.5 21 446.5 22 539.5 23 711.0 24 906.0 25 1147.5 26 1471.5 27 1813.0 28 2193.0 29 2723.0 30 3287.0 31 3864.5 32 4526.5 33 5258.5 34 6042.5 35 6798.0 36 7535.0 37 8190.0 38 8908.5 39 9731.5 40 10720.0 41 11824.5 42 13056.0 43 14582.0 44 16686.0 45 19439.0 46 22655.0 47 26952.0 48 32378.0 49 38829.0 50 46603.5 51 55431.5 52 65059.5 53 75607.5 54 86830.0 55 98348.0 56 110061.0 57 121624.5 58 133018.5 59 144214.0 60 155328.0 61 166409.5 62 176475.0 63 185074.0 64 192221.5 65 197311.0 66 199033.0 67 197028.0 68 190998.0 69 180802.5 70 167235.0 71 149897.5 72 130309.5 73 110464.0 74 91045.5 75 72451.0 76 55177.0 77 40386.5 78 28420.0 79 19111.0 80 12218.0 81 7382.0 82 4226.5 83 2342.5 84 1235.0 85 640.5 86 372.0 87 238.0 88 165.0 89 125.5 90 100.0 91 77.5 92 50.0 93 38.0 94 31.5 95 24.0 96 17.5 97 16.5 98 12.0 99 6.0 100 4.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.043267899060439596 2 0.049232399164565614 3 0.04483484400304897 4 0.03978018289785743 5 0.03088397935272032 6 0.018222053284215507 7 0.05835606245943634 8 0.07028506266768839 9 0.08661161803745707 10-14 0.038349713805088226 15-19 0.039663925692438026 20-24 0.02435841186591804 25-29 0.02663300936325423 30-34 0.03881474262676585 35-39 0.02662290004104385 40-44 0.016407429947451743 45-49 0.014511932033004913 50-54 0.021224521980699282 55-59 0.012277771824510255 60-64 5.964500104126019E-4 65-69 0.0 70-74 1.8702246089208704E-4 75-79 0.00403361956194285 80-84 0.007172564108266797 85-89 4.3470085504647253E-4 90-94 0.0012131186652459699 95-99 0.006894557747481263 100-101 0.0050546611051915415 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 3956744.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.2113837389435766 #Duplication Level Relative count 1 100.0 2 0.15173746913920286 3 0.0020031349061280903 4 5.007837265320226E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.002503918632660113 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 307440 3.301893 4.0599847 8 TTTTT 286195 3.1938062 3.7622612 10-14 >>END_MODULE