##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L003_R2_008.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.5677985 34.0 31.0 34.0 31.0 34.0 2 32.739742 34.0 31.0 34.0 31.0 34.0 3 32.78837775 34.0 31.0 34.0 31.0 34.0 4 36.16150325 37.0 37.0 37.0 35.0 37.0 5 36.03282875 37.0 37.0 37.0 35.0 37.0 6 36.11277425 37.0 37.0 37.0 35.0 37.0 7 36.13575925 37.0 37.0 37.0 35.0 37.0 8 36.12040525 37.0 37.0 37.0 35.0 37.0 9 37.88329575 39.0 39.0 39.0 37.0 39.0 10-14 38.008064049999994 39.4 38.6 39.4 35.2 39.4 15-19 39.2475071 41.0 39.8 41.0 36.6 41.0 20-24 38.346113849999995 40.6 38.6 41.0 33.0 41.0 25-29 38.446675150000004 40.0 38.0 41.0 34.8 41.0 30-34 37.946355749999995 40.0 37.2 41.0 33.4 41.0 35-39 36.653674699999996 38.6 35.2 40.6 31.6 41.0 40-44 35.77712964999999 36.6 35.0 40.0 30.6 41.0 45-49 34.72305955 35.0 34.6 38.4 29.8 40.8 50-54 33.613101799999995 34.8 33.2 36.0 28.6 39.2 55-59 33.73150885 35.0 34.0 35.0 30.0 38.0 60-64 33.38795655 35.0 34.0 35.0 30.0 36.2 65-69 33.0601367 35.0 34.0 35.0 29.2 35.0 70-74 32.74524815000001 35.0 33.2 35.0 29.0 35.0 75-79 32.265866599999995 35.0 33.0 35.0 27.0 35.0 80-84 32.0951318 35.0 33.0 35.0 27.0 35.0 85-89 31.766279149999995 35.0 33.0 35.0 25.2 35.0 90-94 31.30612815 35.0 32.8 35.0 24.0 35.0 95-99 30.633507549999997 35.0 31.6 35.0 20.6 35.0 100-101 29.340173 34.0 30.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 10156.0 3 1537.0 4 1997.0 5 2385.0 6 2892.0 7 3727.0 8 4362.0 9 4974.0 10 5211.0 11 5849.0 12 5757.0 13 5994.0 14 6001.0 15 6247.0 16 6439.0 17 7186.0 18 8108.0 19 9172.0 20 10700.0 21 12427.0 22 14849.0 23 17745.0 24 21335.0 25 26090.0 26 31899.0 27 38438.0 28 46824.0 29 58670.0 30 73193.0 31 94252.0 32 126957.0 33 183910.0 34 318249.0 35 736539.0 36 1319723.0 37 647149.0 38 109005.0 39 14008.0 40 44.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.19657888611055 22.755438414693668 13.603683429323763 26.444299269872023 2 31.424197314046225 24.08141717591618 19.115974718962605 25.37841079107499 3 28.68792126121017 19.65406369170418 20.92809299049878 30.729922056586872 4 30.94682335433012 19.38830821338358 19.438907809838653 30.225960622447644 5 31.63651914411681 20.608699111901956 19.801300855567895 27.953480888413335 6 29.664345210017718 19.10026529502429 17.61214949059149 33.6232400043665 7 32.845000146502464 18.724441894494685 19.08553915534946 29.345018803653396 8 28.62360888141654 19.483362686397804 19.856665533624184 32.03636289856147 9 30.70415436496147 17.857316418812253 19.17613102624904 32.26239818997724 10-14 30.95854940435881 19.276687516544477 19.088581077644605 30.67618200145211 15-19 31.101347121832646 18.827438606379776 18.9517713714773 31.11944290031028 20-24 31.229789221859207 18.876865532332392 18.918749706600583 30.974595539207822 25-29 31.11850873975626 19.017110281667886 18.912371430420226 30.952009548155623 30-34 31.242183465003254 18.766112450762716 18.735522200110907 31.25618188412313 35-39 31.244623027751466 18.902734214620242 18.785635846838517 31.067006910789775 40-44 31.280928156161764 18.942414548998947 18.7435746941647 31.033082600674593 45-49 31.361899337342148 18.739781908997923 18.642555736576806 31.255763017083122 50-54 31.138975302551785 18.759118758933628 18.83436798729004 31.26753795122455 55-59 31.27141659948249 18.844991221061367 18.76581638874993 31.11777579070622 60-64 31.361802311029013 18.639282693202503 18.628412650809338 31.370502344959146 65-69 31.165771748657622 18.765798148697225 18.797958196937294 31.270471905707858 70-74 31.28598241833452 18.846379580331664 18.731972852790076 31.135665148543744 75-79 31.44434374713726 18.678701539448696 18.59299937474773 31.283955338666313 80-84 31.167307849291802 18.76099927651871 18.78299782955613 31.288695044633354 85-89 31.32805494898408 18.82719807111354 18.729257743013438 31.115489236888944 90-94 31.42617 18.633454999999998 18.59451 31.345865 95-99 31.250401098721632 18.73418020373289 18.749941539001604 31.265477158543874 100-101 31.549344806052737 18.91634469876484 18.660179208305333 30.874131286877088 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.64087815598257 2 56.80260810512121 3 59.417843317797036 4 61.172783976777765 5 59.59000003253014 6 63.28758521438422 7 62.19001895015586 8 60.659971779978015 9 62.966552554938716 10-14 61.63473140581092 15-19 62.22079002214292 20-24 62.20438476106702 25-29 62.07051828791188 30-34 62.49836534912638 35-39 62.311629938541245 40-44 62.31401075683636 45-49 62.61766235442528 50-54 62.40651325377633 55-59 62.38919239018871 60-64 62.73230465598816 65-69 62.436243654365484 70-74 62.421647566878256 75-79 62.72829908580357 80-84 62.45600289392515 85-89 62.44354418587302 90-94 62.772035 95-99 62.51587825726551 100-101 62.42347609292983 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 131.0 1 98.5 2 55.0 3 37.0 4 32.5 5 32.0 6 27.0 7 35.0 8 51.5 9 57.5 10 66.5 11 86.5 12 120.5 13 152.5 14 210.5 15 278.0 16 317.0 17 356.0 18 408.5 19 482.0 20 534.0 21 586.0 22 676.5 23 833.0 24 1011.5 25 1264.0 26 1588.0 27 1947.5 28 2334.5 29 2785.0 30 3357.5 31 4010.0 32 4716.5 33 5415.0 34 6120.5 35 6898.0 36 7642.0 37 8380.5 38 9220.5 39 10046.5 40 10952.5 41 12002.5 42 13261.5 43 14947.5 44 17018.0 45 19724.0 46 23099.0 47 27591.5 48 33088.0 49 39444.0 50 47294.5 51 56056.5 52 65936.5 53 76777.0 54 88058.0 55 99628.0 56 111154.5 57 123312.0 58 135312.0 59 146731.0 60 157944.5 61 168312.5 62 178021.5 63 186934.5 64 194076.0 65 198459.5 66 199989.5 67 197765.0 68 191436.0 69 181332.0 70 167637.5 71 150611.0 72 131234.5 73 110554.5 74 90622.0 75 72329.0 76 55197.5 77 40809.0 78 29024.0 79 19682.0 80 12866.0 81 8025.0 82 4794.0 83 2850.5 84 1730.5 85 1072.0 86 729.5 87 533.5 88 400.0 89 296.5 90 221.5 91 173.0 92 144.0 93 123.0 94 104.0 95 72.5 96 50.0 97 45.5 98 31.0 99 19.0 100 16.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.12025 2 0.126725 3 0.11022499999999999 4 0.147425 5 0.092675 6 0.1489 7 0.172325 8 0.194975 9 0.20015 10-14 0.11772 15-19 0.114825 20-24 0.09353 25-29 0.089605 30-34 0.13158 35-39 0.054115 40-44 0.07285 45-49 0.057775 50-54 0.072065 55-59 0.081885 60-64 3.9E-4 65-69 1.5000000000000001E-4 70-74 0.0015099999999999998 75-79 0.00836 80-84 0.038880000000000005 85-89 3.35E-4 90-94 0.0 95-99 0.040195 100-101 0.035325 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.19491716020691674 #Duplication Level Relative count 1 100.0 2 0.15022909937654924 3 0.0015022909937654923 4 5.007636645884975E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 5.007636645884975E-4 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 320375 3.3870401 4.0584035 1 TTTTT 298880 3.3041995 3.698502 9 >>END_MODULE