##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L003_R2_006.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.5753895 34.0 31.0 34.0 31.0 34.0 2 32.72467325 34.0 31.0 34.0 31.0 34.0 3 32.7707995 34.0 31.0 34.0 31.0 34.0 4 36.17279825 37.0 37.0 37.0 35.0 37.0 5 36.16224575 37.0 37.0 37.0 35.0 37.0 6 36.17115975 37.0 37.0 37.0 35.0 37.0 7 36.1713695 37.0 37.0 37.0 35.0 37.0 8 36.1432065 37.0 37.0 37.0 35.0 37.0 9 37.89739325 39.0 39.0 39.0 35.0 39.0 10-14 38.172531549999995 39.4 38.6 39.4 35.4 39.4 15-19 39.33432725 41.0 40.0 41.0 36.6 41.0 20-24 39.11351534999999 41.0 39.0 41.0 35.8 41.0 25-29 38.718440099999995 40.2 38.4 41.0 35.0 41.0 30-34 38.03937075 40.0 37.2 41.0 33.8 41.0 35-39 37.0347706 38.6 35.2 40.8 32.6 41.0 40-44 36.09184465 37.0 35.0 40.0 31.8 41.0 45-49 35.120740749999996 35.0 35.0 38.4 31.0 41.0 50-54 33.76852435 34.8 33.2 36.0 28.8 39.2 55-59 33.88900075 35.0 34.8 35.0 30.8 38.0 60-64 33.531027550000005 35.0 34.2 35.0 30.2 36.4 65-69 33.1950466 35.0 34.0 35.0 29.6 35.0 70-74 32.9242661 35.0 33.8 35.0 29.0 35.0 75-79 32.679787700000006 35.0 33.0 35.0 29.0 35.0 80-84 32.364765999999996 35.0 33.0 35.0 27.0 35.0 85-89 32.055970099999996 35.0 33.0 35.0 27.0 35.0 90-94 31.66369935 35.0 33.0 35.0 25.0 35.0 95-99 31.080534 35.0 32.8 35.0 23.4 35.0 100-101 29.885865125000002 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 7990.0 3 1189.0 4 1547.0 5 1881.0 6 2426.0 7 3132.0 8 3749.0 9 4498.0 10 4640.0 11 4838.0 12 5071.0 13 5033.0 14 5243.0 15 5405.0 16 5819.0 17 6541.0 18 7174.0 19 8076.0 20 9434.0 21 11239.0 22 13590.0 23 16363.0 24 19514.0 25 24237.0 26 29416.0 27 35850.0 28 44520.0 29 54691.0 30 68414.0 31 87505.0 32 116299.0 33 163742.0 34 271253.0 35 655613.0 36 1401627.0 37 748778.0 38 126559.0 39 17039.0 40 65.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.25001941086157 22.736155046448314 13.574328572036837 26.43949697065328 2 31.377747877876494 24.068641312474313 19.140425704575563 25.413185105073637 3 28.70871817040419 19.62427996845248 20.908947238051777 30.758054623091553 4 30.982223109331773 19.348894425810414 19.44977113658852 30.219111328269292 5 31.407352052883013 20.607916223821196 19.85036247381744 28.134369249478354 6 29.706217619433573 19.032751899467996 17.6376810796117 33.623349401486735 7 32.87546720543872 18.692072596046376 19.075950187783356 29.35651001073155 8 28.576279445854137 19.534160083077307 19.819707020778594 32.06985345028996 9 30.74393552869307 17.867756482468895 19.179602719463762 32.20870526937428 10-14 30.86359400647855 19.239733249291298 19.130173921365966 30.766498822864186 15-19 31.06517057243108 18.806514769887244 18.972060273478668 31.15625438420301 20-24 30.95173560823281 18.861923145337567 19.00838827068128 31.17795297574834 25-29 31.111831498904568 18.98371216986324 18.912682978596827 30.991773352635366 30-34 31.243960782607992 18.749139399790447 18.742687557288885 31.264212260312675 35-39 31.093499267008067 18.83694943854324 18.857555376205724 31.211995918242962 40-44 31.235027828660154 18.87982708156672 18.771983175790417 31.113161913982708 45-49 31.355709426441848 18.671886384397514 18.640001004484514 31.332403184676128 50-54 31.15977382299292 18.74817722052128 18.823012184084703 31.269036772401094 55-59 31.258935286327134 18.842933919166104 18.767126721089294 31.13100407341747 60-64 31.37221254716901 18.652327587801736 18.62281242546834 31.352647439560915 65-69 31.17995 18.748514999999998 18.79291 31.278624999999998 70-74 31.29136 18.83887 18.72964 31.14013 75-79 31.373326647984427 18.66451971423684 18.62117029042814 31.340983347350598 80-84 31.174078458877485 18.759799957829422 18.78911230936719 31.2770092739259 85-89 31.290758507432553 18.83400111971909 18.746684630972958 31.128555741875395 90-94 31.412252915354188 18.64335633355669 18.58656954761227 31.35782120347685 95-99 31.214685853968295 18.735963668527017 18.765728480008796 31.283621997495896 100-101 31.470064226228356 18.90347811844782 18.672141170175124 30.954316485148702 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.68951638151484 2 56.790932982950125 3 59.466772793495736 4 61.20133443760106 5 59.54172130236136 6 63.32956702092031 7 62.23197721617028 8 60.6461328961441 9 62.952640798067335 10-14 61.63009282934274 15-19 62.22142495663409 20-24 62.12968858398116 25-29 62.10360485153993 30-34 62.50817304292067 35-39 62.30549518525103 40-44 62.34818974264286 45-49 62.68811261111797 50-54 62.42881059539401 55-59 62.38993935974461 60-64 62.72485998672993 65-69 62.458575 70-74 62.431490000000004 75-79 62.71430999533503 80-84 62.45108773280339 85-89 62.41931424930796 90-94 62.77007411883103 95-99 62.49830785146418 100-101 62.42438071137706 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 49.0 1 34.0 2 18.0 3 19.0 4 20.5 5 21.0 6 22.5 7 20.0 8 27.5 9 45.0 10 57.0 11 70.0 12 95.5 13 136.5 14 176.0 15 194.0 16 216.5 17 280.0 18 343.0 19 389.5 20 462.0 21 554.5 22 651.5 23 817.0 24 1030.5 25 1243.5 26 1514.5 27 1881.5 28 2285.5 29 2718.0 30 3322.5 31 4032.5 32 4711.5 33 5492.0 34 6194.5 35 6834.0 36 7573.5 37 8390.5 38 9358.5 39 10178.5 40 10949.5 41 11998.0 42 13317.0 43 14905.5 44 16983.5 45 19772.0 46 23246.5 47 27473.5 48 32844.5 49 39324.0 50 47208.0 51 56205.5 52 65888.0 53 76629.0 54 88224.0 55 100084.5 56 111653.0 57 123030.5 58 134519.5 59 145833.0 60 156936.5 61 168290.0 62 178511.5 63 187380.0 64 194357.0 65 198782.0 66 200738.5 67 198528.5 68 191855.0 69 181642.0 70 167518.0 71 150425.0 72 131871.5 73 111535.5 74 91266.0 75 72464.5 76 55169.0 77 40581.0 78 28968.5 79 19617.0 80 12631.0 81 7863.5 82 4582.5 83 2536.5 84 1430.5 85 844.0 86 554.5 87 380.0 88 271.0 89 209.5 90 160.5 91 131.0 92 102.5 93 89.0 94 70.5 95 50.0 96 36.0 97 26.5 98 19.0 99 15.0 100 11.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.18475 2 0.185475 3 0.182325 4 0.175175 5 0.1721 6 0.12335 7 0.130925 8 0.165275 9 0.17884999999999998 10-14 0.11348 15-19 0.102995 20-24 0.07177499999999999 25-29 0.069255 30-34 0.106055 35-39 0.077345 40-44 0.049985 45-49 0.048235 50-54 0.066765 55-59 0.055665 60-64 5.5E-4 65-69 0.0 70-74 0.0 75-79 0.010205 80-84 0.02508 85-89 0.0017050000000000001 90-94 0.003145 95-99 0.016165 100-101 0.021374999999999998 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.25928349827893543 #Duplication Level Relative count 1 100.0 2 0.17280413527808944 3 0.0010017631030613881 4 0.0 5 0.0 6 5.008815515306941E-4 7 0.0 8 5.008815515306941E-4 9 0.0 10++ 0.001502644654592082 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 292675 3.2316709 3.7325191 10-14 AAAAA 304450 3.2280393 4.1496816 1 >>END_MODULE