##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L003_R2_004.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.632416 34.0 31.0 34.0 31.0 34.0 2 32.7768375 34.0 31.0 34.0 31.0 34.0 3 32.8419985 34.0 31.0 34.0 31.0 34.0 4 36.224264 37.0 37.0 37.0 35.0 37.0 5 36.23641775 37.0 37.0 37.0 35.0 37.0 6 36.20742675 37.0 37.0 37.0 35.0 37.0 7 36.1990185 37.0 37.0 37.0 35.0 37.0 8 36.1635635 37.0 37.0 37.0 35.0 37.0 9 37.93240525 39.0 39.0 39.0 37.0 39.0 10-14 38.209180149999995 39.4 39.0 39.4 35.8 39.4 15-19 39.3814516 41.0 40.0 41.0 37.0 41.0 20-24 39.17468755 41.0 39.2 41.0 36.0 41.0 25-29 38.77529955 40.2 38.4 41.0 35.0 41.0 30-34 38.0985643 40.0 37.2 41.0 33.8 41.0 35-39 37.11887295 38.8 35.2 40.8 32.8 41.0 40-44 36.1640909 37.0 35.0 40.0 32.0 41.0 45-49 35.17902600000001 35.0 35.0 38.4 31.0 41.0 50-54 33.8198486 34.8 33.4 36.0 29.4 39.2 55-59 33.9910544 35.0 35.0 35.0 31.0 38.2 60-64 33.6021272 35.0 34.6 35.0 30.8 36.4 65-69 33.26476889999999 35.0 34.0 35.0 30.0 35.0 70-74 32.99852675 35.0 34.0 35.0 29.0 35.0 75-79 32.751606499999994 35.0 33.2 35.0 29.0 35.0 80-84 32.44451925 35.0 33.0 35.0 27.8 35.0 85-89 32.111409249999994 35.0 33.0 35.0 27.0 35.0 90-94 31.69666305 35.0 33.0 35.0 25.2 35.0 95-99 31.128409499999997 35.0 33.0 35.0 23.8 35.0 100-101 29.938258125 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 7559.0 3 1080.0 4 1598.0 5 1839.0 6 2394.0 7 2870.0 8 3598.0 9 4129.0 10 4217.0 11 4512.0 12 4623.0 13 4888.0 14 4939.0 15 5007.0 16 5391.0 17 6148.0 18 6911.0 19 7910.0 20 9254.0 21 10791.0 22 12969.0 23 15500.0 24 19122.0 25 23161.0 26 28231.0 27 34836.0 28 42442.0 29 53256.0 30 66500.0 31 85382.0 32 113658.0 33 162405.0 34 268964.0 35 661272.0 36 1417401.0 37 751262.0 38 126573.0 39 17345.0 40 63.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.23418610583912 22.710340996344115 13.55080371611836 26.504669181698397 2 31.375141726548478 24.04338021259608 19.146236769060188 25.43524129179525 3 28.695453272547134 19.62219425440762 20.889129582270463 30.793222890774786 4 31.00401111972776 19.315960072479925 19.39208351256875 30.28794529522357 5 31.410824244899267 20.606823131866374 19.84121264533487 28.141139977899492 6 29.71774156183687 19.010538954008627 17.584558194655965 33.68716128949853 7 32.91733838041257 18.706747729866372 19.01804885233386 29.357865037387192 8 28.62156652059386 19.47947028895152 19.84612238843071 32.0528408020239 9 30.72585936460719 17.82116678328537 19.171689037165415 32.281284814942026 10-14 30.865347711105617 19.222772099991463 19.1173247549397 30.794555433963218 15-19 31.096284987934585 18.772078440229638 18.935743783047112 31.195892788788665 20-24 30.981071983995882 18.83228938416959 18.98162731550367 31.20501131633086 25-29 31.133693911692 18.95132772681295 18.890217642182662 31.02476071931239 30-34 31.295227377175074 18.718734950073042 18.712201842486525 31.273835830265362 35-39 31.105447097699944 18.82826182667919 18.832245196211474 31.234045879409393 40-44 31.247676107111204 18.866650291316283 18.76038731022761 31.125286291344906 45-49 31.37263221178622 18.634252333390506 18.63299150098895 31.360123953834325 50-54 31.181432384184475 18.73470350005387 18.786387635721525 31.29747648004013 55-59 31.281009349606965 18.808681501946197 18.746178643278622 31.16413050516822 60-64 31.371988994098682 18.62497336753689 18.616507981938575 31.38652965642585 65-69 31.16492551440317 18.74506436858368 18.779304413095737 31.310705703917414 70-74 31.311410753962583 18.812654506574464 18.726259325144586 31.149675414318367 75-79 31.404155393067462 18.634045391013885 18.591943505651646 31.369855710267007 80-84 31.208413916121664 18.724851254190092 18.77515062171869 31.291584207969553 85-89 31.330585076313312 18.800491271902878 18.7046361448087 31.164287506975114 90-94 31.429702485520146 18.615887309926055 18.557759383184944 31.396650821368855 95-99 31.230866042373812 18.725303790855442 18.742902892230717 31.30092727454003 100-101 31.471532705416223 18.909993280980924 18.65940250625789 30.959071507344966 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.73885528753752 2 56.810383018343735 3 59.48867616332192 4 61.29195641495132 5 59.55196422279876 6 63.40490285133541 7 62.27520341779977 8 60.67440732261776 9 63.007144179549215 10-14 61.65990314506884 15-19 62.29217777672324 20-24 62.18608330032674 25-29 62.15845463100439 30-34 62.569063207440436 35-39 62.33949297710934 40-44 62.37296239845611 45-49 62.73275616562054 50-54 62.4789088642246 55-59 62.44513985477518 60-64 62.75851865052453 65-69 62.47563121832058 70-74 62.46108616828096 75-79 62.77401110333447 80-84 62.49999812409121 85-89 62.49487258328842 90-94 62.826353306889004 95-99 62.53179331691384 100-101 62.43060421276119 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 9.0 1 6.0 2 4.0 3 6.5 4 8.5 5 15.5 6 27.0 7 39.5 8 56.0 9 79.0 10 116.0 11 159.0 12 182.5 13 219.5 14 251.0 15 264.0 16 283.0 17 318.0 18 350.0 19 382.0 20 451.5 21 546.5 22 643.0 23 790.5 24 983.0 25 1189.0 26 1448.0 27 1800.5 28 2249.0 29 2770.5 30 3354.5 31 3907.5 32 4489.5 33 5280.5 34 6100.5 35 6840.0 36 7535.0 37 8226.0 38 9012.0 39 9861.0 40 10822.0 41 11808.5 42 13064.5 43 14821.5 44 16866.0 45 19642.5 46 23020.5 47 27285.5 48 32679.5 49 39047.5 50 46995.0 51 55859.0 52 65560.5 53 76534.0 54 87884.0 55 99390.0 56 111145.0 57 122760.5 58 134417.5 59 146341.0 60 157362.5 61 167713.0 62 178238.5 63 187527.5 64 194254.0 65 198440.5 66 200150.5 67 198253.5 68 192247.0 69 182341.5 70 168395.0 71 151229.5 72 132351.0 73 112620.0 74 92088.0 75 72733.5 76 55617.5 77 40793.5 78 29014.0 79 19784.5 80 12808.5 81 7857.5 82 4624.0 83 2618.0 84 1508.0 85 905.0 86 573.0 87 399.0 88 310.0 89 245.0 90 181.0 91 132.0 92 110.0 93 95.0 94 73.5 95 59.5 96 49.5 97 34.5 98 28.5 99 22.0 100 13.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.140425 2 0.11574999999999999 3 0.103425 4 0.096475 5 0.0928 6 0.177475 7 0.1931 8 0.23240000000000002 9 0.208975 10-14 0.14447500000000002 15-19 0.11324499999999998 20-24 0.09571 25-29 0.09014 30-34 0.12409999999999999 35-39 0.08459 40-44 0.07338499999999999 45-49 0.06602 50-54 0.085395 55-59 0.08457 60-64 0.004555 65-69 1.3000000000000002E-4 70-74 2.0999999999999998E-4 75-79 0.028229999999999998 80-84 0.048445 85-89 0.010565000000000001 90-94 0.0050349999999999995 95-99 0.051715 100-101 0.0412125 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.2508093848674907 #Duplication Level Relative count 1 100.0 2 0.1657901327322815 3 0.002504382669671926 4 5.008765339343851E-4 5 0.0 6 0.0010017530678687703 7 0.0 8 5.008765339343851E-4 9 0.0 10++ 0.005008765339343852 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 286395 3.1801898 3.7765179 10-14 AAAAA 287445 3.0734031 3.94816 1 >>END_MODULE