##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L003_R2_003.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.6163745 34.0 31.0 34.0 31.0 34.0 2 32.793883 34.0 31.0 34.0 31.0 34.0 3 32.83123825 34.0 31.0 34.0 31.0 34.0 4 36.2297325 37.0 37.0 37.0 35.0 37.0 5 36.2379055 37.0 37.0 37.0 35.0 37.0 6 36.185 37.0 37.0 37.0 35.0 37.0 7 36.18862975 37.0 37.0 37.0 35.0 37.0 8 36.1528835 37.0 37.0 37.0 35.0 37.0 9 37.899734 39.0 39.0 39.0 37.0 39.0 10-14 38.21173915 39.4 39.2 39.4 35.8 39.4 15-19 39.392517 41.0 40.0 41.0 37.0 41.0 20-24 39.18580805 41.0 39.2 41.0 36.0 41.0 25-29 38.79465595 40.4 38.6 41.0 35.0 41.0 30-34 38.1124333 40.0 37.2 41.0 33.8 41.0 35-39 37.14252885 39.0 35.2 40.8 33.0 41.0 40-44 36.17431045000001 37.0 35.0 40.0 32.0 41.0 45-49 35.17557715 35.0 35.0 38.4 31.0 41.0 50-54 33.79324415000001 34.8 33.2 36.0 28.8 39.2 55-59 33.9900822 35.0 35.0 35.0 31.0 38.2 60-64 33.61185210000001 35.0 34.6 35.0 30.8 36.4 65-69 33.29301125 35.0 34.0 35.0 30.0 35.0 70-74 33.01644745 35.0 34.0 35.0 29.2 35.0 75-79 32.7485481 35.0 33.0 35.0 29.0 35.0 80-84 32.43846535 35.0 33.0 35.0 27.4 35.0 85-89 32.12089695 35.0 33.0 35.0 27.0 35.0 90-94 31.7071416 35.0 33.0 35.0 25.2 35.0 95-99 31.1171267 35.0 32.8 35.0 23.6 35.0 100-101 29.999420625 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 8257.0 3 1030.0 4 1388.0 5 1731.0 6 2083.0 7 2747.0 8 3259.0 9 3837.0 10 4128.0 11 4421.0 12 4573.0 13 4748.0 14 4962.0 15 5151.0 16 5506.0 17 5992.0 18 6664.0 19 7852.0 20 8979.0 21 10717.0 22 13031.0 23 15879.0 24 19134.0 25 23158.0 26 28364.0 27 34396.0 28 43211.0 29 53186.0 30 67604.0 31 86475.0 32 115324.0 33 162906.0 34 269938.0 35 652353.0 36 1411290.0 37 760839.0 38 127633.0 39 17195.0 40 59.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.24329322846255 22.74026051097089 13.559626333347774 26.45681992721879 2 31.44153668339042 24.046993703438407 19.10337443442821 25.40809517874296 3 28.70548944624075 19.608504066029404 20.926394570386215 30.759611917343626 4 31.056764424311183 19.344938873739455 19.383122456200226 30.21517424574914 5 31.370758892149002 20.62064602284615 19.823728681216046 28.184866403788806 6 29.711726939771328 19.01989815516166 17.61272251152789 33.65565239353912 7 32.86944104876595 18.70412388237069 19.031011190452205 29.395423878411155 8 28.561110516397342 19.504709004882866 19.858319960630226 32.07586051808956 9 30.77039124639353 17.848055872079023 19.13095952010838 32.250593361419064 10-14 30.866000759054945 19.22661736649202 19.134515093804588 30.772866780648446 15-19 31.05946703508442 18.793871046643567 18.951160785255254 31.195501133016755 20-24 30.958050011766115 18.845490174406297 18.984170634632804 31.212289179194784 25-29 31.126055072091642 18.95328039297095 18.88319710337085 31.03746743156656 30-34 31.278790596521905 18.736519988011924 18.705673479188246 31.279015936277922 35-39 31.10114934210233 18.808654707238652 18.85602616205582 31.234169788603193 40-44 31.23792388864747 18.85565752993895 18.762491450518493 31.143927130895086 45-49 31.36413877575815 18.64168323659252 18.636399141154353 31.357778846494977 50-54 31.153479170321184 18.750762287244598 18.803842753497886 31.29191578893633 55-59 31.286739064211066 18.81936055520779 18.755381438568087 31.138518942013054 60-64 31.36962193634317 18.63333058831041 18.61123040377387 31.385817071572546 65-69 31.15908 18.742415 18.789905 31.3086 70-74 31.29282 18.829985 18.716565 31.16063 75-79 31.38724750814622 18.627828871760148 18.609574173913657 31.375349446179975 80-84 31.17890511449925 18.739252531514737 18.773962614768905 31.30787973921711 85-89 31.300714346002195 18.83205548681972 18.71825634453094 31.148973822647147 90-94 31.437297859324463 18.630564657641163 18.57986464496616 31.352272838068206 95-99 31.23956414757396 18.730669159264515 18.74720343168449 31.282563261477037 100-101 31.431655318634878 18.91008622136428 18.662749734442798 30.995508725558047 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.700113155681336 2 56.849631862133386 3 59.46510136358438 4 61.27193867006032 5 59.55562529593781 6 63.367379333310446 7 62.26486492717711 8 60.636971034486905 9 63.0209846078126 10-14 61.63886753970339 15-19 62.25496816810118 20-24 62.1703391909609 25-29 62.1635225036582 30-34 62.55780653279983 35-39 62.33531913070552 40-44 62.38185101954256 45-49 62.72191762225313 50-54 62.44539495925751 55-59 62.42525800622413 60-64 62.75543900791571 65-69 62.46768 70-74 62.45345 75-79 62.7625969543262 80-84 62.48678485371636 85-89 62.449688168649345 90-94 62.78957069739267 95-99 62.522127409050995 100-101 62.42716404419292 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3.0 1 3.5 2 3.0 3 2.5 4 6.5 5 8.0 6 10.0 7 15.0 8 26.5 9 51.0 10 66.0 11 93.5 12 144.5 13 202.5 14 256.0 15 303.5 16 336.5 17 382.5 18 423.0 19 452.0 20 508.5 21 595.0 22 682.0 23 790.0 24 983.5 25 1222.5 26 1515.5 27 1880.0 28 2287.0 29 2770.0 30 3337.0 31 3985.5 32 4668.0 33 5301.5 34 5994.0 35 6784.0 36 7527.5 37 8275.0 38 9055.5 39 9903.0 40 10790.0 41 11846.5 42 13147.5 43 14802.0 44 16903.0 45 19569.0 46 23086.0 47 27331.5 48 32734.0 49 39264.0 50 46915.0 51 55912.0 52 65828.0 53 76663.5 54 88252.5 55 99671.0 56 111237.5 57 123135.5 58 134569.5 59 145893.5 60 156912.0 61 167867.5 62 178544.5 63 187349.0 64 194321.5 65 199114.5 66 200832.5 67 198652.0 68 192321.5 69 182053.0 70 168175.5 71 151148.5 72 131777.5 73 111826.5 74 91763.5 75 72762.0 76 55612.5 77 40700.0 78 28736.5 79 19399.0 80 12537.5 81 7733.0 82 4581.0 83 2623.0 84 1451.0 85 835.5 86 516.0 87 355.5 88 251.5 89 181.5 90 142.5 91 121.5 92 104.0 93 76.5 94 61.0 95 46.0 96 31.5 97 24.0 98 22.5 99 21.0 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.159675 2 0.11215000000000001 3 0.096025 4 0.08795 5 0.1057 6 0.22567500000000001 7 0.24085 8 0.278825 9 0.239975 10-14 0.16532999999999998 15-19 0.12063 20-24 0.115705 25-29 0.104575 30-34 0.150775 35-39 0.098065 40-44 0.08166 45-49 0.077505 50-54 0.09507499999999999 55-59 0.10803 60-64 8.35E-4 65-69 0.0 70-74 0.0 75-79 0.025735 80-84 0.057859999999999995 85-89 0.0036399999999999996 90-94 2.4999999999999998E-5 95-99 0.05608 100-101 0.045075 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.2966766224814928 #Duplication Level Relative count 1 100.0 2 0.176331503226065 3 0.00400753416422875 4 0.0030056506231715624 5 0.0 6 5.009417705285937E-4 7 5.009417705285937E-4 8 0.0010018835410571874 9 0.0 10++ 0.0030056506231715624 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 283295 3.1370256 3.871813 9 AAAAA 284580 3.0341363 3.776818 1 >>END_MODULE