##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L003_R2_002.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.60665025 34.0 31.0 34.0 31.0 34.0 2 32.7676555 34.0 31.0 34.0 31.0 34.0 3 32.8022685 34.0 31.0 34.0 31.0 34.0 4 36.21348725 37.0 37.0 37.0 35.0 37.0 5 36.1996165 37.0 37.0 37.0 35.0 37.0 6 36.19408525 37.0 37.0 37.0 35.0 37.0 7 36.1992655 37.0 37.0 37.0 35.0 37.0 8 36.17588925 37.0 37.0 37.0 35.0 37.0 9 37.9497725 39.0 39.0 39.0 37.0 39.0 10-14 38.22684305 39.4 39.0 39.4 35.4 39.4 15-19 39.3762604 41.0 40.0 41.0 36.8 41.0 20-24 39.17150790000001 41.0 39.0 41.0 35.8 41.0 25-29 38.77387865 40.4 38.4 41.0 35.0 41.0 30-34 38.1065911 40.0 37.2 41.0 33.8 41.0 35-39 37.114329100000006 38.8 35.2 40.8 32.8 41.0 40-44 36.162062250000005 37.0 35.0 40.0 32.0 41.0 45-49 35.1821331 35.0 35.0 38.4 31.0 41.0 50-54 33.80579504999999 34.8 33.4 36.0 29.0 39.2 55-59 33.969887650000004 35.0 35.0 35.0 31.0 38.0 60-64 33.5896192 35.0 34.4 35.0 30.6 36.4 65-69 33.2377634 35.0 34.0 35.0 29.8 35.0 70-74 32.987115499999994 35.0 34.0 35.0 29.0 35.0 75-79 32.71260595 35.0 33.0 35.0 29.0 35.0 80-84 32.42020545 35.0 33.0 35.0 27.4 35.0 85-89 32.0998765 35.0 33.0 35.0 27.0 35.0 90-94 31.703846050000003 35.0 33.0 35.0 25.2 35.0 95-99 31.14251625 35.0 33.0 35.0 23.8 35.0 100-101 29.99293525 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 5667.0 3 1067.0 4 1462.0 5 1853.0 6 2416.0 7 2963.0 8 3414.0 9 4113.0 10 4364.0 11 4743.0 12 4933.0 13 4872.0 14 4913.0 15 5367.0 16 5543.0 17 6117.0 18 7129.0 19 8023.0 20 9290.0 21 11024.0 22 13157.0 23 16089.0 24 19428.0 25 23769.0 26 29231.0 27 35312.0 28 43777.0 29 54805.0 30 68355.0 31 87275.0 32 115792.0 33 164511.0 34 268948.0 35 644758.0 36 1408314.0 37 761737.0 38 128051.0 39 17351.0 40 67.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.187900083966 22.73335613149566 13.631381753893004 26.447362030645337 2 31.388289189747926 24.07510207677495 19.11865333240563 25.417955401071502 3 28.71303086469498 19.600780639577867 20.92943460691974 30.756753888807413 4 30.999663682516292 19.349215659582647 19.407095297961273 30.244025359939787 5 31.38827524295499 20.590314735919797 19.866711681735786 28.154698339389427 6 29.71721585169151 19.036742715885232 17.588079692986362 33.65796173943689 7 32.91376114175707 18.687159613923487 19.050480092225772 29.34859915209367 8 28.61561863332828 19.44538325079348 19.84005743992766 32.09894067595059 9 30.770994565792858 17.84975214518387 19.14791411704835 32.23133917197492 10-14 30.863054117081152 19.21669857725277 19.129656967580015 30.790590338086066 15-19 31.04963141683629 18.79682832723043 18.969001732940463 31.184538522992817 20-24 30.97282922888198 18.854794469291637 18.991241846209995 31.181134455616384 25-29 31.122233922810565 18.96800810830264 18.90564424477026 31.004113724116532 30-34 31.277317696979363 18.740294115263108 18.70780232301805 31.27458586473948 35-39 31.09030793706148 18.820683515617038 18.8656254542337 31.223383093087786 40-44 31.229979876407583 18.886712952346326 18.78550731233881 31.097799858907283 45-49 31.356303447897826 18.643088887698568 18.652636470797173 31.347971193606426 50-54 31.157916575532823 18.74798027977811 18.805879134540163 31.28822401014891 55-59 31.2643640327621 18.840568690640502 18.759566851003836 31.13550042559356 60-64 31.37816800439005 18.64857979652271 18.605274309335982 31.36797788975126 65-69 31.161260000000002 18.749695 18.79541 31.293635 70-74 31.29342 18.8371 18.72372 31.14576 75-79 31.413455139176566 18.61980614096792 18.609835007748632 31.35690371210688 80-84 31.200321465337833 18.74183927883342 18.76831966097109 31.289519594857655 85-89 31.335307278832776 18.82123882955502 18.711656303677803 31.1317975879344 90-94 31.427125141700113 18.634799907839927 18.575894860715888 31.362180089744072 95-99 31.234433660155936 18.726386534769407 18.76649901374111 31.272680791333546 100-101 31.463160480646195 18.902424921691527 18.666014903457576 30.968399694204706 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.635262114611336 2 56.80624459081942 3 59.469784753502395 4 61.243689042456076 5 59.542973582344416 6 63.375177591128406 7 62.26236029385074 8 60.71455930927886 9 63.00233373776778 10-14 61.65364445516721 15-19 62.23416993982911 20-24 62.15396368449837 25-29 62.126347646927094 30-34 62.551903561718845 35-39 62.313691030149265 40-44 62.32777973531487 45-49 62.704274641504256 50-54 62.44614058568173 55-59 62.39986445835566 60-64 62.746145894141314 65-69 62.454895 70-74 62.43918000000001 75-79 62.77035885128345 80-84 62.48984106019548 85-89 62.46710486676717 90-94 62.78930523144418 95-99 62.50711445148948 100-101 62.4315601748509 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 14.0 1 9.5 2 8.5 3 8.0 4 5.5 5 9.5 6 11.5 7 16.0 8 21.0 9 30.0 10 53.0 11 73.0 12 97.0 13 113.0 14 119.5 15 148.0 16 175.5 17 191.5 18 240.5 19 298.0 20 333.0 21 411.5 22 546.5 23 695.0 24 877.0 25 1113.0 26 1427.0 27 1820.5 28 2194.0 29 2696.5 30 3266.5 31 3857.5 32 4663.0 33 5389.5 34 6062.0 35 6772.5 36 7505.0 37 8303.5 38 9129.0 39 9939.5 40 10741.5 41 11775.0 42 13043.5 43 14805.0 44 17038.0 45 19673.5 46 23131.5 47 27538.5 48 32750.5 49 39221.5 50 47165.0 51 56146.5 52 66058.0 53 76701.0 54 87804.5 55 99315.5 56 111419.5 57 123500.0 58 134968.0 59 146522.5 60 157901.0 61 168845.5 62 178774.5 63 187407.5 64 195017.5 65 199596.0 66 200646.5 67 198418.0 68 192165.0 69 181654.0 70 167380.5 71 150752.0 72 131839.0 73 111594.0 74 91632.5 75 72577.0 76 55233.0 77 40492.0 78 28630.0 79 19392.0 80 12567.0 81 7775.0 82 4655.0 83 2620.5 84 1470.0 85 882.5 86 550.0 87 381.5 88 268.5 89 205.0 90 165.0 91 129.5 92 109.0 93 83.5 94 62.0 95 47.5 96 38.5 97 28.5 98 22.0 99 22.5 100 11.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.13815 2 0.11195000000000001 3 0.10755 4 0.0944 5 0.10752500000000001 6 0.1217 7 0.136375 8 0.13915 9 0.128025 10-14 0.088015 15-19 0.057155 20-24 0.045715000000000006 25-29 0.038265 30-34 0.06707 35-39 0.03769 40-44 0.030275 45-49 0.027055 50-54 0.032565 55-59 0.04548 60-64 0.0011250000000000001 65-69 0.0 70-74 0.0 75-79 0.011365 80-84 0.020325 85-89 0.002305 90-94 7.999999999999999E-5 95-99 0.018645000000000002 100-101 0.014812500000000001 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.1804350433843676 #Duplication Level Relative count 1 100.0 2 0.14270621047413512 3 0.0015021706365698434 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 5.007235455232812E-4 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 286445 3.1614394 3.6265433 10-14 AAAAA 291790 3.1019845 4.149023 1 >>END_MODULE