##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L003_R2_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.6397145 34.0 31.0 34.0 31.0 34.0 2 32.78089875 34.0 31.0 34.0 31.0 34.0 3 32.83527 34.0 31.0 34.0 31.0 34.0 4 36.1970275 37.0 37.0 37.0 35.0 37.0 5 36.21104175 37.0 37.0 37.0 35.0 37.0 6 36.2056265 37.0 37.0 37.0 35.0 37.0 7 36.21005625 37.0 37.0 37.0 35.0 37.0 8 36.18853425 37.0 37.0 37.0 35.0 37.0 9 37.96677425 39.0 39.0 39.0 37.0 39.0 10-14 38.2516794 39.4 39.2 39.4 37.0 39.4 15-19 39.43967915 41.0 40.0 41.0 37.0 41.0 20-24 39.2372188 41.0 39.4 41.0 36.2 41.0 25-29 38.84614875 40.6 38.6 41.0 35.0 41.0 30-34 38.183950349999996 40.0 37.4 41.0 34.2 41.0 35-39 37.2159596 39.0 35.2 41.0 33.0 41.0 40-44 36.2273053 37.0 35.0 40.0 32.0 41.0 45-49 35.24305735 35.0 35.0 38.8 31.2 41.0 50-54 33.852676 34.8 33.4 36.2 29.4 39.2 55-59 34.04211795 35.0 35.0 35.0 31.0 38.2 60-64 33.678235799999996 35.0 34.8 35.0 31.0 36.4 65-69 33.3505718 35.0 34.0 35.0 30.0 35.2 70-74 33.07761905 35.0 34.0 35.0 29.4 35.0 75-79 32.816053749999995 35.0 33.4 35.0 29.0 35.0 80-84 32.49601800000001 35.0 33.0 35.0 27.8 35.0 85-89 32.191839550000005 35.0 33.0 35.0 27.0 35.0 90-94 31.816826150000004 35.0 33.0 35.0 25.8 35.0 95-99 31.229689450000002 35.0 33.0 35.0 23.8 35.0 100-101 30.170766999999998 34.0 31.5 35.0 19.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 7653.0 3 969.0 4 1304.0 5 1627.0 6 2174.0 7 2598.0 8 3277.0 9 3695.0 10 4035.0 11 4307.0 12 4449.0 13 4512.0 14 4626.0 15 4805.0 16 5292.0 17 5757.0 18 6605.0 19 7510.0 20 8772.0 21 10509.0 22 12533.0 23 15158.0 24 18264.0 25 22411.0 26 27498.0 27 33975.0 28 42112.0 29 51961.0 30 66081.0 31 85172.0 32 113571.0 33 160721.0 34 264556.0 35 636143.0 36 1414283.0 37 788268.0 38 133992.0 39 18756.0 40 69.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.15979198933936 22.744757448273596 13.609372858332392 26.486077704054644 2 31.39230618726202 24.098147631799076 19.149856164076418 25.359690016862483 3 28.65053655828616 19.615108956265935 20.98267687184152 30.751677613606386 4 30.99546598915755 19.36414136214701 19.40987974012786 30.23051290856758 5 31.369578292804945 20.645017288790054 19.841438635755015 28.14396578264999 6 29.685835942391986 19.0467877269881 17.62627426424546 33.64110206637445 7 32.889471752611925 18.675154097728207 19.090331768870318 29.34504238078955 8 28.613312853869406 19.542308027569124 19.815259004100902 32.02912011446056 9 30.745844998681193 17.886162570007745 19.167273886795797 32.20071854451527 10-14 30.852273757250163 19.232610496002263 19.140980971725646 30.774134775021928 15-19 31.029225943997684 18.823890232104322 18.961350885675394 31.1855329382226 20-24 30.951571685549396 18.852625060714672 19.015820294378962 31.179982959356977 25-29 31.110785090578446 18.971180941328914 18.918041373606787 30.999992594485853 30-34 31.250245285905255 18.74611547219439 18.7394477002394 31.264191541660956 35-39 31.09879924622243 18.83179388873304 18.863850152429887 31.205556712614644 40-44 31.210960531535186 18.87323262910018 18.805070542730917 31.11073629663371 45-49 31.350546865880908 18.65120675126089 18.654438810244066 31.343807572614136 50-54 31.12807450797791 18.76459291091153 18.82543480239243 31.281897778718125 55-59 31.253403345050607 18.85003132040805 18.77532975758049 31.12123557696085 60-64 31.365956450620462 18.645753758992285 18.62370336429022 31.36458642609703 65-69 31.149015000000002 18.76538 18.794635 31.29097 70-74 31.27731380760209 18.859585547384167 18.73851390686344 31.1245867381503 75-79 31.3658633804039 18.658264964687696 18.61865036805166 31.357221286856742 80-84 31.18340810541766 18.75062682448129 18.788647715312614 31.277317354788437 85-89 31.294735907856197 18.843042275493865 18.73513782443526 31.127083992214676 90-94 31.411838139696474 18.637907342545184 18.590499500445052 31.35975501731329 95-99 31.217528913525094 18.740183741502456 18.76664303003569 31.275644314936756 100-101 31.41020752165023 18.92781439251201 18.694502255354827 30.96747583048294 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.645869693394005 2 56.75199620412451 3 59.402214171892545 4 61.22597889772513 5 59.51354407545493 6 63.32693800876644 7 62.234514133401476 8 60.64243296832997 9 62.946563543196454 10-14 61.626408532272094 15-19 62.21475888222028 20-24 62.13155464490637 25-29 62.1107776850643 30-34 62.514436827566215 35-39 62.30435595883708 40-44 62.3216968281689 45-49 62.69435443849505 50-54 62.40997228669604 55-59 62.374638922011464 60-64 62.730542876717486 65-69 62.439985 70-74 62.4019005457524 75-79 62.72308466726064 80-84 62.46072546020609 85-89 62.42181990007087 90-94 62.77159315700976 95-99 62.49317322846185 100-101 62.37768335213316 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5.0 1 3.5 2 3.0 3 3.0 4 6.0 5 14.5 6 24.0 7 33.5 8 48.0 9 70.0 10 98.0 11 120.0 12 142.5 13 166.0 14 204.5 15 252.5 16 274.5 17 276.0 18 305.0 19 359.0 20 423.5 21 509.0 22 635.5 23 767.0 24 958.0 25 1231.5 26 1537.0 27 1899.5 28 2285.5 29 2781.5 30 3336.5 31 3968.0 32 4670.5 33 5373.0 34 6227.0 35 6931.0 36 7599.0 37 8418.0 38 9236.0 39 10046.5 40 10979.0 41 12084.5 42 13238.5 43 14918.0 44 17103.0 45 19742.0 46 23125.5 47 27414.5 48 33003.5 49 39858.0 50 47821.5 51 56563.0 52 66019.0 53 76647.5 54 87846.0 55 99439.0 56 111560.5 57 123498.0 58 135210.0 59 146706.0 60 158028.0 61 168328.0 62 178041.5 63 187615.5 64 194837.0 65 198992.0 66 200351.5 67 197845.0 68 191698.0 69 181590.0 70 167325.5 71 150266.0 72 131272.5 73 111212.0 74 91122.0 75 72116.0 76 54918.5 77 40389.0 78 28594.0 79 19409.5 80 12607.0 81 7782.5 82 4558.0 83 2556.0 84 1456.5 85 868.0 86 550.5 87 372.0 88 294.5 89 237.5 90 170.0 91 131.0 92 100.0 93 81.5 94 69.5 95 64.5 96 47.5 97 25.5 98 22.0 99 20.5 100 13.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.23107499999999997 2 0.20747500000000002 3 0.204225 4 0.19322499999999998 5 0.202675 6 0.1875 7 0.205375 8 0.19269999999999998 9 0.194075 10-14 0.15227000000000002 15-19 0.113235 20-24 0.08593 25-29 0.07446 30-34 0.11656 35-39 0.08193 40-44 0.06908 45-49 0.063705 50-54 0.060634999999999994 55-59 0.089105 60-64 0.0017900000000000001 65-69 0.0 70-74 0.001355 75-79 0.024225 80-84 0.041795 85-89 0.004125 90-94 0.005995 95-99 0.035105 100-101 0.021275 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.2617356469965307 #Duplication Level Relative count 1 100.0 2 0.15174430833642163 3 0.003505644086980038 4 0.0015024188944200163 5 0.0015024188944200163 6 0.0 7 5.008062981400054E-4 8 0.0 9 0.0 10++ 0.002504031490700027 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 287570 3.175985 3.6341226 10-14 AAAAA 290225 3.0826027 3.8277516 1 >>END_MODULE