##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L003_R1_010.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.77360775 34.0 31.0 34.0 31.0 34.0 2 33.00800425 34.0 31.0 34.0 31.0 34.0 3 33.06016775 34.0 31.0 34.0 31.0 34.0 4 36.4559675 37.0 37.0 37.0 35.0 37.0 5 36.38558325 37.0 37.0 37.0 35.0 37.0 6 36.36505075 37.0 37.0 37.0 35.0 37.0 7 36.35988275 37.0 37.0 37.0 35.0 37.0 8 36.3377515 37.0 37.0 37.0 35.0 37.0 9 38.14825425 39.0 39.0 39.0 37.0 39.0 10-14 38.4002494 39.4 38.6 39.4 37.0 39.4 15-19 39.5476005 41.0 40.0 41.0 37.0 41.0 20-24 39.04590889999999 40.4 38.8 41.0 35.6 41.0 25-29 37.218397200000005 40.0 36.6 41.0 27.6 41.0 30-34 36.9844378 39.4 36.0 41.0 31.0 41.0 35-39 36.1825757 38.2 35.0 40.0 29.8 41.0 40-44 33.8216524 36.0 33.6 39.4 19.4 41.0 45-49 34.26350939999999 35.0 33.6 38.4 27.6 40.8 50-54 32.9716314 35.0 33.0 36.0 23.8 39.6 55-59 33.38377455 35.0 33.4 35.0 28.6 37.8 60-64 32.98435885 35.0 33.0 35.0 27.4 36.2 65-69 32.77848660000001 35.0 33.0 35.0 28.6 35.0 70-74 32.28638575 35.0 33.0 35.0 26.2 35.0 75-79 31.780587250000004 34.4 32.4 35.0 25.8 35.0 80-84 31.368316399999998 35.0 32.4 35.0 23.4 35.0 85-89 31.4994278 35.0 32.8 35.0 24.0 35.0 90-94 31.23355555 35.0 32.8 35.0 24.0 35.0 95-99 30.663971600000004 35.0 31.8 35.0 20.8 35.0 100-101 29.168912249999998 33.5 29.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 34.0 3 7.0 4 43.0 5 125.0 6 411.0 7 1191.0 8 3113.0 9 4856.0 10 6001.0 11 7090.0 12 7370.0 13 7118.0 14 6753.0 15 7121.0 16 7539.0 17 8488.0 18 9382.0 19 10435.0 20 11282.0 21 13175.0 22 15342.0 23 19026.0 24 23618.0 25 29661.0 26 36776.0 27 46104.0 28 57296.0 29 72930.0 30 93865.0 31 126545.0 32 183124.0 33 295779.0 34 478757.0 35 763527.0 36 1078929.0 37 480680.0 38 78654.0 39 7839.0 40 14.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.35108262069086 23.098891565421642 13.8129924483441 25.7370333655434 2 30.998900000000003 24.068025000000002 19.84515 25.087925 3 28.297475 19.8471 21.6021 30.253324999999997 4 30.669025 19.832825 20.0023 29.49585 5 31.17935 20.670575 20.072000000000003 28.078075000000002 6 29.728275 19.111 17.79 33.370725 7 32.750375 18.87855 19.159925 29.211150000000004 8 28.5564 19.518025 19.969875000000002 31.955699999999997 9 30.681425 17.86905 19.283925 32.1656 10-14 30.822889999999997 19.246565 19.204105 30.72644 15-19 31.033265 18.821845 18.976275 31.168615 20-24 31.077563055689527 18.883186359476756 18.927162014714018 31.112088570119695 25-29 32.193947523024576 18.684634860284433 18.602308780503442 30.519108836187552 30-34 32.293089449340364 18.63699735836145 18.43598147746147 30.633931714836717 35-39 31.554528005487676 18.743318758777352 18.778296892942453 30.923856342792515 40-44 31.56003746860117 18.818579871262177 18.807028877127248 30.81435378300941 45-49 31.604729999999996 18.765124999999998 18.595285 31.03486 50-54 31.547831965243844 18.931165190243355 18.704819171686275 30.81618367282653 55-59 31.279356065198883 18.8506820004667 18.7659716319766 31.103990302357815 60-64 31.429670820403505 18.621816720562045 18.63326728954627 31.315245169488183 65-69 31.24107756572861 18.763676397779054 18.76666731853401 31.22857871795832 70-74 31.41599 18.849705 18.712295 31.02201 75-79 31.49731 18.668789999999998 18.566505 31.267394999999997 80-84 31.295888815170613 18.683293229957073 18.751179713276738 31.269638241595576 85-89 31.358040475231537 18.799450347724292 18.705679133281272 31.136830043762902 90-94 31.467510058307624 18.584768432594608 18.595777326440363 31.351944182657405 95-99 31.33094416225989 18.659680428034704 18.71240273199939 31.296972677706016 100-101 31.6057125 18.765024999999998 18.6353625 30.993900000000004 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.088115986234264 2 56.086825 3 58.5508 4 60.164874999999995 5 59.257425 6 63.099000000000004 7 61.961524999999995 8 60.512100000000004 9 62.847025 10-14 61.549330000000005 15-19 62.201879999999996 20-24 62.189651625809226 25-29 62.713056359212125 30-34 62.92702116417708 35-39 62.478384348280194 40-44 62.37439125161058 45-49 62.63959 50-54 62.36401563807037 55-59 62.383346367556705 60-64 62.74491598989168 65-69 62.46965628368694 70-74 62.438 75-79 62.764705 80-84 62.56552705676619 85-89 62.49487051899444 90-94 62.81945424096504 95-99 62.627916839965906 100-101 62.5996125 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5.0 1 3.0 2 1.5 3 2.0 4 3.0 5 4.0 6 3.5 7 4.5 8 8.5 9 11.0 10 14.0 11 22.0 12 23.0 13 29.0 14 42.0 15 52.5 16 74.0 17 111.5 18 151.0 19 195.5 20 258.5 21 341.0 22 447.5 23 585.5 24 777.0 25 1031.5 26 1354.5 27 1683.0 28 2086.0 29 2579.0 30 3123.0 31 3749.5 32 4433.0 33 5197.5 34 5985.0 35 6806.5 36 7604.5 37 8424.5 38 9204.0 39 10019.5 40 11023.0 41 12152.5 42 13455.0 43 15046.5 44 17073.0 45 19695.5 46 23420.0 47 28175.5 48 33446.5 49 39786.5 50 47698.0 51 56824.0 52 66651.5 53 77406.5 54 88800.0 55 100739.5 56 112616.5 57 124055.5 58 136081.0 59 147592.5 60 158667.5 61 169768.5 62 179602.5 63 188356.0 64 195345.0 65 199763.0 66 201002.0 67 197998.0 68 191167.5 69 180499.5 70 166194.0 71 148986.5 72 129229.5 73 109078.5 74 89780.5 75 70964.5 76 54124.0 77 39933.0 78 28314.0 79 19410.0 80 12740.5 81 7955.5 82 4849.0 83 2916.5 84 1711.5 85 1062.0 86 722.5 87 498.5 88 357.0 89 256.0 90 182.5 91 137.5 92 97.0 93 57.0 94 38.0 95 28.5 96 13.0 97 3.0 98 1.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.005375 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.00149 25-29 0.007385000000000001 30-34 0.060134999999999994 35-39 0.023254999999999998 40-44 2.259495 45-49 0.0 50-54 4.5E-4 55-59 4.35E-4 60-64 0.048635 65-69 0.030784999999999996 70-74 0.0 75-79 0.0 80-84 0.002185 85-89 0.03862 90-94 0.03537 95-99 0.00437 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.011499482523289044 #Duplication Level Relative count 1 100.0 2 0.007000490034302401 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 288085 3.2164655 3.8663898 95-97 AAAAA 285390 3.061113 3.8108377 1 >>END_MODULE