##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L003_R1_008.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.777483 34.0 31.0 34.0 31.0 34.0 2 33.00869 34.0 31.0 34.0 31.0 34.0 3 33.058162 34.0 31.0 34.0 31.0 34.0 4 36.462289 37.0 37.0 37.0 35.0 37.0 5 36.3916765 37.0 37.0 37.0 35.0 37.0 6 36.37030775 37.0 37.0 37.0 35.0 37.0 7 36.35714325 37.0 37.0 37.0 35.0 37.0 8 36.34884725 37.0 37.0 37.0 35.0 37.0 9 38.14362575 39.0 39.0 39.0 37.0 39.0 10-14 38.346744750000006 39.4 38.8 39.4 36.2 39.4 15-19 39.546490500000004 41.0 40.0 41.0 37.0 41.0 20-24 39.0045072 40.4 38.8 41.0 35.4 41.0 25-29 28.504022050000003 27.6 24.6 31.4 20.4 40.4 30-34 34.141784200000004 37.6 33.0 39.4 20.4 40.6 35-39 35.40035105 37.8 34.4 40.0 27.4 41.0 40-44 34.06443425 35.4 33.0 39.2 24.8 41.0 45-49 33.358414700000004 35.0 32.8 38.0 23.4 40.6 50-54 32.772742 35.0 32.4 35.8 23.8 39.4 55-59 32.74009185 35.0 32.8 35.0 25.8 37.4 60-64 32.6904804 35.0 33.0 35.0 26.6 35.8 65-69 32.389004850000006 35.0 33.0 35.0 27.0 35.0 70-74 31.664999799999997 35.0 32.8 35.0 23.8 35.0 75-79 31.117171050000003 34.4 31.6 35.0 23.0 35.0 80-84 31.046756799999997 35.0 32.0 35.0 21.6 35.0 85-89 31.204792749999996 35.0 32.6 35.0 24.0 35.0 90-94 30.92570115 35.0 32.2 35.0 22.8 35.0 95-99 30.198577049999994 34.6 31.0 35.0 13.4 35.0 100-101 28.55430175 33.5 29.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 29.0 3 12.0 4 51.0 5 162.0 6 535.0 7 2054.0 8 6016.0 9 7995.0 10 7758.0 11 8257.0 12 7215.0 13 7763.0 14 8262.0 15 8883.0 16 9486.0 17 10586.0 18 11751.0 19 12624.0 20 13770.0 21 15417.0 22 18417.0 23 22828.0 24 28864.0 25 35473.0 26 44395.0 27 56231.0 28 71479.0 29 91718.0 30 123259.0 31 177671.0 32 276285.0 33 443474.0 34 705979.0 35 903463.0 36 643990.0 37 189433.0 38 26564.0 39 1848.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.281000332754246 23.13744500242378 13.8276013019166 25.753953362905378 2 30.97955 24.104025 19.83065 25.085774999999998 3 28.277925 19.8431 21.633375 30.2456 4 30.675449999999998 19.792725 20.007925 29.523899999999998 5 31.2207 20.657575 20.023075000000002 28.098649999999996 6 29.6644 19.145200000000003 17.84405 33.34635 7 32.719375 18.883875 19.179850000000002 29.216900000000003 8 28.545274999999997 19.562124999999998 19.96 31.9326 9 30.691325000000003 17.910625 19.2611 32.13695 10-14 30.891955 19.27045 19.18914 30.648455000000002 15-19 31.014605 18.811465 18.99246 31.18147 20-24 31.133993432475876 18.799625312918415 18.95162318567821 31.1147580689275 25-29 37.474092660062865 17.513445462343398 17.130548102993927 27.881913774599816 30-34 32.61272751393619 18.774701707884283 18.304459407515818 30.3081113706637 35-39 31.626447148397908 18.806642007507385 18.734627205609613 30.83228363848509 40-44 31.77537774686125 18.98646117488089 18.565537957891877 30.672623120365976 45-49 31.968580000000003 18.97071 18.481144999999998 30.579565 50-54 31.74938714889687 19.056114301005742 18.610268498483297 30.584230051614092 55-59 31.382783537087654 18.909359182019386 18.71899903924928 30.98885824164368 60-64 31.3729878602037 18.61068921175015 18.587663027932667 31.428659900113487 65-69 31.250844209756636 18.820614706769305 18.75332305973833 31.17521802373573 70-74 31.503465000000002 18.90319 18.709915 30.88343 75-79 31.684755 18.693205 18.52299 31.099050000000002 80-84 31.3953418019207 18.834988953614282 18.729732896128173 31.03993634833685 85-89 31.379741560233853 18.782013371741044 18.732176447121443 31.10606862090366 90-94 31.502525757967575 18.57796163586012 18.566417686990956 31.353094919181352 95-99 31.378773946475103 18.650777102587142 18.686413367674554 31.284035583263204 100-101 31.721899999999998 18.8085125 18.557937499999998 30.91165 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.034953695659624 2 56.065325 3 58.523525 4 60.199349999999995 5 59.31935000000001 6 63.01075 7 61.936274999999995 8 60.477875000000004 9 62.828275 10-14 61.54041 15-19 62.19607499999999 20-24 62.248751501403376 25-29 65.35600643466267 30-34 62.920838884599895 35-39 62.458730786882995 40-44 62.44800086722723 45-49 62.548145 50-54 62.33361720051096 55-59 62.37164177873134 60-64 62.80164776031718 65-69 62.42606223349236 70-74 62.386894999999996 75-79 62.783805 80-84 62.435278150257545 85-89 62.485810181137516 90-94 62.85562067714893 95-99 62.662809529738304 100-101 62.63355000000001 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1.0 1 1.0 2 1.5 3 1.0 4 1.0 5 1.0 6 1.5 7 5.5 8 6.0 9 8.0 10 12.5 11 13.5 12 20.0 13 26.0 14 35.0 15 51.5 16 69.0 17 100.0 18 123.0 19 172.5 20 244.0 21 310.0 22 405.0 23 544.5 24 733.5 25 939.5 26 1201.5 27 1535.5 28 1914.5 29 2436.0 30 3024.0 31 3619.5 32 4310.5 33 5000.0 34 5678.5 35 6444.5 36 7286.0 37 8147.0 38 9052.0 39 9980.0 40 10877.5 41 11812.0 42 13115.5 43 14811.5 44 16820.5 45 19470.0 46 23065.5 47 27417.0 48 32656.5 49 39318.0 50 47180.0 51 56047.0 52 65876.5 53 76537.0 54 88150.5 55 100017.5 56 112219.0 57 124648.0 58 136620.5 59 148480.5 60 160129.5 61 170899.5 62 180863.0 63 189648.5 64 196634.5 65 201306.0 66 202131.5 67 198866.5 68 192345.5 69 181504.5 70 166261.0 71 148630.0 72 129310.0 73 108930.5 74 89059.5 75 70265.0 76 53458.5 77 39583.0 78 28011.0 79 19019.0 80 12588.0 81 8046.0 82 4974.0 83 3060.0 84 1917.0 85 1191.0 86 807.0 87 580.5 88 424.5 89 322.5 90 221.5 91 148.0 92 106.5 93 72.5 94 39.0 95 21.5 96 12.0 97 9.5 98 5.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.001275 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.0018899999999999998 25-29 4.38038 30-34 0.086615 35-39 0.034440000000000005 40-44 0.0031399999999999996 45-49 0.0 50-54 1.7999999999999998E-4 55-59 7.500000000000001E-5 60-64 0.04857 65-69 0.05446 70-74 0.0 75-79 0.0 80-84 0.005755000000000001 85-89 0.033960000000000004 90-94 0.07751999999999999 95-99 0.00355 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.08398572242718656 #Duplication Level Relative count 1 100.0 2 0.06604424964726367 3 5.003352246004823E-4 4 0.0 5 5.003352246004823E-4 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 285650 3.2976496 4.045579 95-97 AAAAA 285125 3.0773077 3.6629822 1 >>END_MODULE