##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L003_R1_006.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.7995405 34.0 31.0 34.0 31.0 34.0 2 33.019826 34.0 31.0 34.0 31.0 34.0 3 33.0724035 34.0 33.0 34.0 31.0 34.0 4 36.46187675 37.0 37.0 37.0 35.0 37.0 5 36.4039395 37.0 37.0 37.0 35.0 37.0 6 36.375534 37.0 37.0 37.0 35.0 37.0 7 36.3738465 37.0 37.0 37.0 35.0 37.0 8 36.35415575 37.0 37.0 37.0 35.0 37.0 9 38.15195175 39.0 39.0 39.0 37.0 39.0 10-14 38.42678825 39.4 38.8 39.4 37.0 39.4 15-19 39.5778101 41.0 40.0 41.0 37.0 41.0 20-24 39.331293699999996 41.0 39.0 41.0 36.2 41.0 25-29 38.901216950000006 40.0 38.4 41.0 35.0 41.0 30-34 38.1444659 40.0 37.2 41.0 33.8 41.0 35-39 37.12881585 38.6 35.2 40.6 32.8 41.0 40-44 36.1291395 36.6 35.0 40.0 31.8 41.0 45-49 35.49502345 35.0 35.0 38.8 32.0 41.0 50-54 34.61415905 35.0 35.0 36.6 31.0 40.0 55-59 33.9549421 35.0 34.0 35.0 30.8 38.0 60-64 33.4491847 35.0 34.0 35.0 30.0 36.2 65-69 33.0714019 35.0 33.0 35.0 29.2 35.0 70-74 32.771956800000005 35.0 33.0 35.0 29.0 35.0 75-79 32.173416499999995 34.4 32.6 35.0 27.0 35.0 80-84 32.3412664 35.0 33.0 35.0 27.2 35.0 85-89 32.03538565 35.0 33.0 35.0 27.0 35.0 90-94 31.62369435 35.0 33.0 35.0 25.2 35.0 95-99 31.059861849999997 35.0 32.6 35.0 23.8 35.0 100-101 29.738968625 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 33.0 3 9.0 4 34.0 5 100.0 6 294.0 7 860.0 8 2042.0 9 3331.0 10 4306.0 11 4966.0 12 5072.0 13 5359.0 14 5655.0 15 6079.0 16 6622.0 17 7171.0 18 8100.0 19 8773.0 20 9419.0 21 10690.0 22 12243.0 23 15136.0 24 18767.0 25 23263.0 26 29424.0 27 36549.0 28 45638.0 29 57173.0 30 71859.0 31 92475.0 32 121891.0 33 171211.0 34 280248.0 35 684249.0 36 1415479.0 37 706028.0 38 116792.0 39 12639.0 40 21.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.290086260782594 23.104688086010754 13.8512064008001 25.75401925240655 2 31.0065 24.049300000000002 19.830075 25.114124999999998 3 28.28755 19.798425 21.637600000000003 30.276425 4 30.679511257517845 19.76518419847313 19.988269460395177 29.567035083613845 5 31.254324999999998 20.6206 20.056775 28.0683 6 29.662175 19.11775 17.812375 33.4077 7 32.758925 18.864675000000002 19.154075000000002 29.222324999999998 8 28.58395 19.558600000000002 19.937225 31.920225000000002 9 30.6929 17.874850000000002 19.269949999999998 32.1623 10-14 30.827935 19.238084999999998 19.211714999999998 30.722265 15-19 31.021205000000002 18.803415 18.979925 31.195455 20-24 30.925629347254883 18.867187441405342 19.018839792016777 31.188343419323 25-29 31.080896080896082 18.983148983148983 18.954283954283955 30.981670981670984 30-34 31.251381529278067 18.760245951353262 18.747560517547694 31.240812001820977 35-39 31.089261119847304 18.83719381183284 18.891976311557052 31.1815687567628 40-44 31.222231588985366 18.891209579458668 18.81995884557611 31.066599985979853 45-49 31.33822 18.689664999999998 18.675805 31.29631 50-54 31.129630000000002 18.764085 18.83616 31.270125 55-59 31.26483595456135 18.846731673741424 18.78166159891084 31.10677077278639 60-64 31.36848783643175 18.642646482570587 18.640445628859435 31.348420052138227 65-69 31.159555979004278 18.74043676901956 18.81128607545556 31.2887211765206 70-74 31.32797 18.81634 18.73663 31.119059999999998 75-79 31.394355 18.626545 18.628220000000002 31.350879999999997 80-84 31.215154882799002 18.73560406836666 18.79044523648354 31.258795812350805 85-89 31.30796574761735 18.79649713729882 18.74601124433972 31.14952587074411 90-94 31.431223214178527 18.60989339693236 18.58549854141073 31.37338484747838 95-99 31.280805271433398 18.68448871862171 18.727059957444762 31.307646052500125 100-101 31.565642045389204 18.817472178624804 18.67508403787817 30.94180173810782 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.04410551318915 2 56.120625000000004 3 58.563975 4 60.24654634113169 5 59.322624999999995 6 63.069874999999996 7 61.981249999999996 8 60.504175000000004 9 62.855199999999996 10-14 61.5502 15-19 62.216660000000005 20-24 62.11397276657789 25-29 62.06256706256706 30-34 62.49219353109905 35-39 62.270829876610115 40-44 62.28883157496522 45-49 62.63453 50-54 62.399755 55-59 62.37160672734774 60-64 62.71690788856997 65-69 62.44827715552488 70-74 62.447030000000005 75-79 62.745235 80-84 62.4739506951498 85-89 62.45749161836146 90-94 62.80460806165691 95-99 62.588451323933526 100-101 62.50744378349703 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 7.0 1 4.0 2 0.5 3 1.5 4 3.0 5 1.5 6 2.5 7 4.5 8 5.0 9 6.5 10 12.5 11 21.5 12 23.5 13 31.5 14 42.5 15 57.5 16 75.5 17 103.5 18 150.5 19 205.5 20 285.5 21 380.5 22 479.5 23 623.0 24 808.5 25 1090.0 26 1420.0 27 1798.0 28 2296.5 29 2803.0 30 3255.5 31 3837.0 32 4551.0 33 5362.5 34 6218.5 35 6885.0 36 7688.5 37 8569.5 38 9238.5 39 10019.5 40 11022.5 41 12137.5 42 13324.0 43 14948.5 44 17079.5 45 19874.0 46 23649.5 47 27976.5 48 33499.0 49 40311.5 50 48026.5 51 56942.5 52 66989.5 53 77817.5 54 89246.0 55 100916.5 56 112396.0 57 124044.5 58 135513.5 59 146913.0 60 157683.0 61 168118.0 62 178562.0 63 187536.5 64 194542.0 65 198797.0 66 199928.0 67 197445.5 68 190742.5 69 180815.5 70 167014.0 71 149477.5 72 130093.5 73 110161.5 74 90574.0 75 71864.5 76 54939.0 77 40325.0 78 28432.5 79 19434.0 80 12787.5 81 7878.0 82 4644.5 83 2727.5 84 1584.5 85 919.0 86 598.0 87 415.5 88 295.0 89 214.5 90 150.0 91 103.5 92 75.5 93 54.0 94 34.5 95 17.5 96 9.5 97 7.0 98 3.0 99 0.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0125 2 0.0 3 0.0 4 0.0046 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.0015500000000000002 25-29 9.999999999999999E-5 30-34 0.042835 35-39 0.013689999999999999 40-44 0.0010299999999999999 45-49 0.0 50-54 0.0 55-59 1.15E-4 60-64 0.03879 65-69 0.02725 70-74 0.0 75-79 0.0 80-84 0.00213 85-89 0.03148 90-94 0.0404 95-99 0.00291 100-101 4.5E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.14998050253466935 #Duplication Level Relative count 1 100.0 2 0.13368314590989655 3 0.0025034296986872016 4 5.006859397374403E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 5.006859397374403E-4 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 295390 3.206178 3.5841236 10-14 AAAAA 294915 3.129756 3.6490462 1 >>END_MODULE