##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L003_R1_004.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.821209 34.0 31.0 34.0 31.0 34.0 2 33.0493535 34.0 31.0 34.0 31.0 34.0 3 33.0893435 34.0 33.0 34.0 31.0 34.0 4 36.481406 37.0 37.0 37.0 35.0 37.0 5 36.41888225 37.0 37.0 37.0 35.0 37.0 6 36.38957425 37.0 37.0 37.0 35.0 37.0 7 36.37852525 37.0 37.0 37.0 35.0 37.0 8 36.35841975 37.0 37.0 37.0 35.0 37.0 9 38.15321 39.0 39.0 39.0 37.0 39.0 10-14 38.417592150000004 39.4 38.6 39.4 37.0 39.4 15-19 39.55899505 41.0 40.0 41.0 37.0 41.0 20-24 39.3101468 40.8 39.0 41.0 36.2 41.0 25-29 38.85975115 40.0 38.2 41.0 35.0 41.0 30-34 38.1035128 40.0 37.0 41.0 33.8 41.0 35-39 37.044047850000005 38.6 35.2 40.4 32.6 41.0 40-44 36.10186365 36.6 35.0 40.0 31.8 41.0 45-49 35.509797500000005 35.0 35.0 38.8 32.0 41.0 50-54 34.613239799999995 35.0 34.6 36.6 31.2 39.8 55-59 33.9407553 35.0 34.0 35.0 30.8 38.0 60-64 33.4258271 35.0 33.8 35.0 29.8 36.2 65-69 33.02626475000001 35.0 33.0 35.0 29.0 35.0 70-74 32.717468350000004 35.0 33.0 35.0 29.0 35.0 75-79 32.082559249999996 34.4 32.4 35.0 26.8 35.0 80-84 32.29122815 35.0 33.0 35.0 27.0 35.0 85-89 31.98175145 35.0 33.0 35.0 27.0 35.0 90-94 31.544689499999997 35.0 33.0 35.0 25.0 35.0 95-99 30.94368775 35.0 32.2 35.0 23.0 35.0 100-101 29.4974335 34.0 29.5 35.0 11.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 26.0 3 13.0 4 30.0 5 95.0 6 259.0 7 758.0 8 1903.0 9 3102.0 10 4047.0 11 4638.0 12 4757.0 13 5068.0 14 5494.0 15 5878.0 16 6411.0 17 7282.0 18 8051.0 19 8738.0 20 9886.0 21 10763.0 22 12462.0 23 15387.0 24 19040.0 25 23757.0 26 29763.0 27 37614.0 28 46630.0 29 57234.0 30 73642.0 31 94402.0 32 125721.0 33 176852.0 34 293332.0 35 715213.0 36 1407963.0 37 665014.0 38 107845.0 39 10918.0 40 12.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.30615575948237 23.162970930677385 13.842420278266593 25.688453031573648 2 30.96515 24.070275 19.83175 25.132824999999997 3 28.241625 19.792375 21.625525 30.340475 4 30.665225000000003 19.795650000000002 19.975175 29.56395 5 31.193975000000002 20.659325 20.028950000000002 28.11775 6 29.655775000000002 19.0942 17.836199999999998 33.413825 7 32.785599999999995 18.858575 19.14575 29.210075000000003 8 28.563149999999997 19.5459 19.916675 31.974275000000002 9 30.643775 17.90515 19.2483 32.202775 10-14 30.831955 19.22814 19.19228 30.747625 15-19 31.036540000000002 18.810805 18.962680000000002 31.189974999999997 20-24 30.952713336590698 18.858069809084128 18.98833108564464 31.200885768680532 25-29 31.110445882669 18.99169257232555 18.931207006785513 30.966654538219935 30-34 31.258326237115625 18.73257399551625 18.753319864276893 31.25577990309123 35-39 31.08467012057613 18.802502592532328 18.875285518592975 31.237541768298566 40-44 31.235302223681806 18.8597795638558 18.799983439688667 31.104934772773728 45-49 31.353334999999998 18.650325000000002 18.663285 31.333054999999998 50-54 31.14415773444488 18.748470601294322 18.816101649575568 31.291270014685228 55-59 31.273255729650785 18.83548975970392 18.749864374389684 31.141390136255616 60-64 31.368833466385627 18.628079933829703 18.642012154899884 31.361074444884785 65-69 31.17645755312784 18.7250519114327 18.791025738696522 31.307464796742934 70-74 31.3271 18.779885 18.72723 31.165785 75-79 31.42598 18.585189999999997 18.60657 31.382260000000002 80-84 31.225997511144715 18.714101437980272 18.754537210186754 31.305363840688262 85-89 31.33576538746462 18.78353372592964 18.717747507079487 31.162953379526254 90-94 31.43948494186604 18.58615069330785 18.58293873433407 31.391425630492037 95-99 31.299192692978785 18.65481336119875 18.72239150514775 31.323602440674712 100-101 31.59660672242962 18.791152678115512 18.608126191025303 31.00411440842957 >>END_MODULE >>Per base GC content warn #Base %GC 1 62.99460879105603 2 56.097975 3 58.582100000000004 4 60.229175 5 59.311725 6 63.0696 7 61.99567499999999 8 60.537425 9 62.84655 10-14 61.57958 15-19 62.226515000000006 20-24 62.153599105271226 25-29 62.07710042088893 30-34 62.51410614020686 35-39 62.322211888874705 40-44 62.34023699645553 45-49 62.68639 50-54 62.43542774913011 55-59 62.414645865906394 60-64 62.72990791127041 65-69 62.48392234987078 70-74 62.492885 75-79 62.808240000000005 80-84 62.53136135183297 85-89 62.498718766990876 90-94 62.83091057235808 95-99 62.6227951336535 100-101 62.60072113085919 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 6.0 1 4.5 2 2.0 3 1.0 4 2.0 5 3.0 6 3.0 7 4.0 8 7.0 9 10.0 10 10.0 11 15.0 12 20.0 13 19.5 14 38.5 15 57.0 16 79.5 17 118.0 18 146.0 19 199.0 20 274.0 21 356.5 22 472.5 23 636.0 24 834.5 25 1061.0 26 1366.0 27 1763.0 28 2250.5 29 2752.5 30 3281.5 31 3957.5 32 4604.0 33 5250.0 34 6101.0 35 6897.5 36 7567.0 37 8246.0 38 9037.5 39 10017.5 40 10886.0 41 11895.5 42 13136.5 43 14840.5 44 17004.5 45 19736.5 46 23379.0 47 27796.0 48 33588.0 49 40345.5 50 47955.0 51 56767.5 52 66564.0 53 77380.5 54 88985.5 55 100741.0 56 112218.5 57 123722.5 58 135182.5 59 146396.0 60 157690.0 61 168524.0 62 178550.5 63 187333.0 64 193951.0 65 198796.0 66 200349.5 67 197626.0 68 191501.5 69 181462.5 70 167096.0 71 149518.0 72 130569.5 73 110783.0 74 90773.0 75 72166.0 76 55413.0 77 40894.5 78 29031.5 79 19627.0 80 12752.5 81 7872.5 82 4649.5 83 2768.5 84 1599.0 85 905.5 86 576.5 87 396.0 88 272.0 89 187.5 90 131.0 91 89.5 92 58.5 93 43.0 94 26.5 95 13.5 96 8.5 97 4.0 98 1.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.01315 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 9.8E-4 25-29 9.350000000000001E-4 30-34 0.05239 35-39 0.01089 40-44 0.00188 45-49 0.0 50-54 0.0015500000000000002 55-59 4.5E-4 60-64 0.051829999999999994 65-69 0.043695000000000005 70-74 0.0 75-79 0.0 80-84 0.014275 85-89 0.047455000000000004 90-94 0.06099 95-99 0.019450000000000002 100-101 8.125E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.15748582627562574 #Duplication Level Relative count 1 100.0 2 0.14571638883742358 3 0.0020029744170092585 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0010014872085046293 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 282495 3.0890868 3.562854 10-14 >>END_MODULE