##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L003_R1_002.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.8053905 34.0 31.0 34.0 31.0 34.0 2 33.032001 34.0 31.0 34.0 31.0 34.0 3 33.073443 34.0 31.0 34.0 31.0 34.0 4 36.46241175 37.0 37.0 37.0 35.0 37.0 5 36.38853525 37.0 37.0 37.0 35.0 37.0 6 36.35953125 37.0 37.0 37.0 35.0 37.0 7 36.34579575 37.0 37.0 37.0 35.0 37.0 8 36.32225 37.0 37.0 37.0 35.0 37.0 9 38.11360025 39.0 39.0 39.0 37.0 39.0 10-14 38.397676849999996 39.4 38.6 39.4 37.0 39.4 15-19 39.533820500000004 41.0 39.8 41.0 37.0 41.0 20-24 39.284142100000004 40.8 39.0 41.0 36.0 41.0 25-29 38.8493889 40.0 38.2 41.0 35.0 41.0 30-34 38.1118482 40.0 37.0 41.0 33.6 41.0 35-39 37.092291349999996 38.6 35.2 40.6 32.6 41.0 40-44 36.09073595 36.6 35.0 40.0 31.8 41.0 45-49 35.5052784 35.0 35.0 38.8 32.0 41.0 50-54 34.6179941 35.0 34.8 36.6 31.0 40.0 55-59 33.9337864 35.0 34.0 35.0 30.6 38.0 60-64 33.41587705 35.0 33.8 35.0 29.8 36.2 65-69 33.03947125 35.0 33.0 35.0 29.0 35.0 70-74 32.739447 35.0 33.0 35.0 29.0 35.0 75-79 32.07783005 34.4 32.4 35.0 26.6 35.0 80-84 32.3515534 35.0 33.0 35.0 27.0 35.0 85-89 32.04715695 35.0 33.0 35.0 27.0 35.0 90-94 31.58258915 35.0 33.0 35.0 25.0 35.0 95-99 30.9934613 35.0 32.4 35.0 23.4 35.0 100-101 29.674166875 34.0 30.5 35.0 11.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 26.0 3 13.0 4 34.0 5 100.0 6 279.0 7 827.0 8 1924.0 9 3154.0 10 4135.0 11 4671.0 12 4969.0 13 5118.0 14 5378.0 15 6002.0 16 6639.0 17 7288.0 18 7952.0 19 8802.0 20 9540.0 21 10641.0 22 12602.0 23 15534.0 24 18947.0 25 24057.0 26 30335.0 27 37705.0 28 47360.0 29 58781.0 30 74306.0 31 95877.0 32 126702.0 33 175899.0 34 285522.0 35 680530.0 36 1407421.0 37 695115.0 38 113787.0 39 12009.0 40 19.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.229352576705004 23.170690233762155 13.857788229222045 25.742168960310796 2 31.004775000000002 24.026149999999998 19.818649999999998 25.150425 3 28.286450000000002 19.810725 21.591949999999997 30.310875 4 30.612650000000002 19.83005 19.955524999999998 29.601775000000004 5 31.224800000000002 20.6853 20.017725 28.072174999999998 6 29.69975 19.0874 17.784875 33.427974999999996 7 32.754575 18.885425 19.220724999999998 29.139274999999998 8 28.576475000000002 19.539225 19.964975 31.919324999999997 9 30.644525 17.897875 19.272025 32.185575 10-14 30.822480000000002 19.2422 19.205145 30.730175 15-19 31.029230000000002 18.805934999999998 18.989535 31.1753 20-24 30.938684774807008 18.872561262349784 19.001272259860013 31.1874817029832 25-29 31.079162280795614 18.99063831948955 18.945377930250203 30.984821469464634 30-34 31.250274209819224 18.7668174726872 18.75597164576669 31.226936671726886 35-39 31.089123200344698 18.82678811842687 18.882662209141426 31.201426472087007 40-44 31.225427891639036 18.903570755146482 18.800640850536528 31.07036050267795 45-49 31.337605000000003 18.662235 18.66407 31.33609 50-54 31.161950615893808 18.74337303023433 18.810938996427648 31.283737357444213 55-59 31.264789999999998 18.84628 18.783659999999998 31.10527 60-64 31.385963140800342 18.629298044012728 18.631318531859517 31.35342028332741 65-69 31.173367141670877 18.73763990189394 18.799897710740158 31.28909524569503 70-74 31.316475 18.813755 18.740245 31.129525 75-79 31.39442 18.635975 18.60695 31.362655 80-84 31.218182452790543 18.730367417631538 18.749649340039202 31.30180078953872 85-89 31.345377938943315 18.805221307325283 18.710319726705855 31.139081027025544 90-94 31.44821954389388 18.597585542969224 18.577702909031924 31.37649200410498 95-99 31.300725741617264 18.659126966803488 18.722174491525564 31.317972800053685 100-101 31.590353349355084 18.831548865631547 18.662385477523756 30.915712307489613 >>END_MODULE >>Per base GC content warn #Base %GC 1 62.971521537015796 2 56.15520000000001 3 58.597325 4 60.214425000000006 5 59.296974999999996 6 63.127725 7 61.89384999999999 8 60.4958 9 62.8301 10-14 61.552655 15-19 62.204530000000005 20-24 62.1261664777902 25-29 62.063983750260256 30-34 62.47721088154611 35-39 62.29054967243171 40-44 62.295788394316986 45-49 62.673694999999995 50-54 62.44568797333802 55-59 62.37006 60-64 62.73938342412776 65-69 62.4624623873659 70-74 62.446 75-79 62.75707499999999 80-84 62.51998324232926 85-89 62.484458965968855 90-94 62.82471154799886 95-99 62.618698541670945 100-101 62.5060656568447 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2.0 1 2.0 2 1.5 3 2.5 4 3.0 5 2.0 6 2.5 7 4.5 8 7.5 9 8.5 10 8.5 11 13.5 12 23.0 13 32.0 14 41.5 15 57.5 16 75.0 17 103.0 18 150.0 19 204.0 20 272.0 21 374.5 22 495.0 23 640.5 24 820.5 25 1034.0 26 1372.5 27 1801.0 28 2214.5 29 2757.0 30 3304.0 31 3900.5 32 4643.0 33 5351.5 34 6016.5 35 6796.5 36 7573.5 37 8364.5 38 9228.0 39 10090.5 40 10901.5 41 11897.5 42 13320.0 43 14925.5 44 17052.0 45 19758.0 46 23196.5 47 27841.5 48 33307.5 49 40042.0 50 48269.0 51 57187.5 52 66921.5 53 77920.0 54 89152.5 55 100576.5 56 112172.5 57 123741.0 58 135491.5 59 146831.5 60 157920.0 61 168772.5 62 178874.5 63 187523.5 64 194269.5 65 198703.0 66 200328.5 67 197749.5 68 191227.5 69 181034.5 70 167182.5 71 150307.0 72 130599.0 73 110066.0 74 90313.5 75 71626.0 76 54710.0 77 40368.5 78 28700.5 79 19485.0 80 12560.0 81 7731.5 82 4628.0 83 2676.5 84 1546.0 85 959.0 86 566.5 87 367.5 88 274.5 89 188.0 90 149.0 91 105.0 92 65.5 93 52.5 94 34.5 95 15.5 96 10.5 97 7.0 98 1.5 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.02445 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 7.750000000000001E-4 25-29 8.600000000000001E-4 30-34 0.053724999999999995 35-39 0.01627 40-44 0.004765 45-49 0.0 50-54 0.00143 55-59 0.0 60-64 0.024145 65-69 0.028605 70-74 0.0 75-79 0.0 80-84 0.00997 85-89 0.02274 90-94 0.038395 95-99 0.011935 100-101 5.25E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.13498380194377388 #Duplication Level Relative count 1 100.0 2 0.11964716601419746 3 0.0025030787869078966 4 0.0 5 5.006157573815794E-4 6 0.0 7 0.0 8 0.0 9 0.0 10++ 5.006157573815794E-4 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 281250 3.0665085 3.6204226 10-14 >>END_MODULE