##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L002_R2_011.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2592787 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.34546648066347 34.0 31.0 34.0 31.0 34.0 2 32.50412664056091 34.0 31.0 34.0 31.0 34.0 3 32.555192925604764 34.0 31.0 34.0 31.0 34.0 4 35.98270239707311 37.0 37.0 37.0 35.0 37.0 5 35.99231830458885 37.0 37.0 37.0 35.0 37.0 6 35.96787086636889 37.0 37.0 37.0 35.0 37.0 7 35.94490600269131 37.0 37.0 37.0 35.0 37.0 8 35.96186497386789 37.0 37.0 37.0 35.0 37.0 9 37.68394742799929 39.0 38.0 39.0 35.0 39.0 10-14 37.85260331835974 39.4 38.2 39.4 35.0 39.4 15-19 38.97215961048864 41.0 39.0 41.0 35.6 41.0 20-24 38.7588177509375 40.4 38.6 41.0 34.8 41.0 25-29 38.30760174283502 40.0 38.0 41.0 33.6 41.0 30-34 37.65861507327829 39.8 36.6 41.0 32.8 41.0 35-39 36.64160835425355 38.4 35.0 40.6 31.4 41.0 40-44 35.698603163314225 36.4 35.0 39.8 31.0 41.0 45-49 34.765553283011684 35.0 34.4 38.4 29.8 40.8 50-54 33.484094374123295 34.8 33.2 35.8 27.8 39.2 55-59 33.612622633482815 35.0 34.0 35.0 29.4 38.0 60-64 33.22414506089393 35.0 34.0 35.0 28.8 36.2 65-69 32.935577430772376 35.0 33.4 35.0 29.0 35.0 70-74 32.62959880622666 35.0 33.0 35.0 27.4 35.0 75-79 32.39539746226743 35.0 33.0 35.0 27.0 35.0 80-84 32.13376555806551 35.0 33.0 35.0 27.0 35.0 85-89 31.81992041768182 35.0 33.0 35.0 25.4 35.0 90-94 31.413253846150877 35.0 33.0 35.0 24.0 35.0 95-99 30.84557188847368 35.0 32.4 35.0 22.2 35.0 100-101 29.648892485190647 34.0 30.5 35.0 10.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 3377.0 3 874.0 4 1161.0 5 1443.0 6 1988.0 7 2764.0 8 3287.0 9 3824.0 10 4047.0 11 4094.0 12 4043.0 13 4069.0 14 3979.0 15 4121.0 16 4548.0 17 4994.0 18 5612.0 19 6242.0 20 7404.0 21 8692.0 22 10694.0 23 12995.0 24 15909.0 25 19323.0 26 23162.0 27 27806.0 28 34105.0 29 41809.0 30 51234.0 31 64317.0 32 83273.0 33 114271.0 34 183873.0 35 430013.0 36 875414.0 37 441148.0 38 73297.0 39 9554.0 40 27.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.24920319816313 22.743513519977718 13.572364883162734 26.434918398696418 2 31.435976602340077 24.08196895844616 19.141134302012503 25.340920137201262 3 28.69664739991421 19.631025746265202 20.92582248871306 30.74650436510753 4 30.96472684910158 19.34048002962574 19.460641736809215 30.23415138446346 5 31.413954274195135 20.626873466944243 19.82138152552814 28.137790733332483 6 29.727963710493988 19.060476724069765 17.582396812324856 33.629162753111395 7 32.87471706148194 18.712747392799667 19.035416882036817 29.37711866368157 8 28.62276114350785 19.517161914394684 19.826072130226795 32.03400481187067 9 30.693579983442472 17.89791117417272 19.15847470115818 32.25003414122663 10-14 30.892882903524182 19.25738636845788 19.106685088712023 30.743045639305915 15-19 31.067554099695123 18.810585475446974 18.94862684172478 31.173233583133126 20-24 30.974566550502114 18.89386702689043 18.961393555004037 31.17017286760342 25-29 31.145514518498302 19.012708020231564 18.862581162187993 30.979196299082133 30-34 31.29140347491032 18.75075503460546 18.72127107790476 31.23657041257945 35-39 31.094666849026414 18.84817602066497 18.849417980038705 31.20773915026991 40-44 31.25696164177806 18.895916783041148 18.77509662218827 31.07202495299253 45-49 31.363621321798067 18.696426468050635 18.62272146040668 31.317230749744617 50-54 31.156000581318033 18.80416494004309 18.804712625554977 31.235121853083903 55-59 31.27852588589152 18.853574112997684 18.74994600292016 31.117953998190632 60-64 31.387661230945696 18.66633857698299 18.615042423461702 31.330957768609608 65-69 31.181607862606185 18.774014867812355 18.776645260464413 31.26773200911705 70-74 31.293885691342943 18.838223116669436 18.744694415700174 31.123196776287447 75-79 31.380882851042635 18.666691453387095 18.627714078391808 31.324711617178462 80-84 31.20777648881351 18.75434524047823 18.789890107889626 31.247988162818636 85-89 31.316903393915506 18.852616894484584 18.728163940963913 31.102315770635997 90-94 31.393454225125318 18.674592243790176 18.591230209037608 31.34072332204689 95-99 31.233464222089975 18.737698083182305 18.770990443873718 31.257847250854002 100-101 31.424139352750537 18.936630737503698 18.727589269770327 30.91164063997544 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.68412159685954 2 56.776896739541336 3 59.44315176502174 4 61.19887823356505 5 59.55174500752762 6 63.35712646360538 7 62.25183572516352 8 60.656765955378525 9 62.943614124669104 10-14 61.6359285428301 15-19 62.24078768282825 20-24 62.14473941810553 25-29 62.12471081758044 30-34 62.52797388748977 35-39 62.302405999296326 40-44 62.32898659477058 45-49 62.68085207154268 50-54 62.391122434401936 55-59 62.396479884082154 60-64 62.71861899955531 65-69 62.44933987172323 70-74 62.417082467630394 75-79 62.70559446822109 80-84 62.45576465163214 85-89 62.41921916455151 90-94 62.73417754717221 95-99 62.49131147294398 100-101 62.33577999272597 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 73.0 1 44.5 2 14.0 3 12.0 4 11.5 5 11.0 6 15.5 7 16.5 8 14.0 9 18.5 10 25.5 11 28.0 12 33.0 13 38.5 14 41.5 15 54.0 16 77.5 17 103.5 18 122.5 19 148.5 20 194.0 21 254.5 22 324.5 23 438.5 24 576.5 25 733.0 26 928.0 27 1161.5 28 1454.0 29 1750.5 30 2080.5 31 2553.5 32 3036.0 33 3458.0 34 3835.5 35 4316.5 36 4943.5 37 5400.5 38 5885.5 39 6393.0 40 6961.5 41 7750.5 42 8500.0 43 9453.0 44 10820.0 45 12670.0 46 15011.5 47 17719.0 48 21213.5 49 25546.0 50 30504.0 51 36153.5 52 42795.5 53 49979.5 54 57102.0 55 64502.0 56 72187.0 57 79990.0 58 87683.0 59 95173.5 60 102461.5 61 108978.0 62 115493.0 63 121616.0 64 126479.5 65 129504.5 66 130360.0 67 128891.5 68 124750.0 69 118365.5 70 109401.0 71 98020.5 72 85255.0 73 72307.5 74 59359.5 75 46873.5 76 35845.5 77 26507.0 78 18624.0 79 12383.5 80 7876.5 81 4780.0 82 2736.0 83 1507.0 84 828.0 85 458.0 86 257.5 87 148.5 88 109.5 89 85.5 90 54.5 91 40.0 92 36.0 93 25.5 94 19.5 95 16.5 96 10.0 97 8.5 98 7.0 99 4.5 100 2.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.021174126528712155 2 0.015080297764529058 3 0.015851668494172487 4 0.01724013580753066 5 0.01288189118504528 6 0.011647698017615794 7 0.013537556305242195 8 0.01727870434401283 9 0.023642512863571132 10-14 0.009295017292203332 15-19 0.008901618220085183 20-24 0.0010876327287972364 25-29 0.0017895800927727576 30-34 0.007351163053501889 35-39 0.004227111598445996 40-44 3.008345845609377E-4 45-49 7.250884858648242E-4 50-54 0.0022446888232623813 55-59 0.0020904146773336957 60-64 0.0 65-69 7.019473639755213E-4 70-74 0.0 75-79 3.08548291857372E-5 80-84 2.931208772645034E-4 85-89 0.0 90-94 0.0 95-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2592787.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.1684258926072418 #Duplication Level Relative count 1 100.0 2 0.12165145606279819 3 0.0020024931039143734 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0010012465519571867 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 199465 3.2471583 4.3353605 1 TTTTT 182645 3.1012642 3.5990496 10-14 >>END_MODULE