##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L002_R2_009.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.58043425 34.0 31.0 34.0 31.0 34.0 2 32.7580115 34.0 31.0 34.0 31.0 34.0 3 32.81190625 34.0 31.0 34.0 31.0 34.0 4 36.15788575 37.0 37.0 37.0 35.0 37.0 5 36.18643875 37.0 37.0 37.0 35.0 37.0 6 36.1901455 37.0 37.0 37.0 35.0 37.0 7 36.17553825 37.0 37.0 37.0 35.0 37.0 8 36.13098175 37.0 37.0 37.0 35.0 37.0 9 37.887444 39.0 39.0 39.0 35.0 39.0 10-14 38.15295875 39.4 38.6 39.4 35.4 39.4 15-19 39.2950774 41.0 39.6 41.0 36.2 41.0 20-24 39.093478250000004 41.0 39.0 41.0 35.8 41.0 25-29 38.60835515 40.0 38.2 41.0 35.0 41.0 30-34 38.006944100000005 40.0 37.2 41.0 33.6 41.0 35-39 36.98845535 38.6 35.0 40.8 32.6 41.0 40-44 36.0202235 36.8 35.0 40.0 31.4 41.0 45-49 35.081840500000006 35.0 35.0 38.4 31.0 41.0 50-54 33.74350595 34.8 33.4 36.0 28.8 39.2 55-59 33.8920413 35.0 34.8 35.0 30.8 38.0 60-64 33.51310545 35.0 34.0 35.0 30.0 36.2 65-69 33.2099798 35.0 34.0 35.0 29.8 35.0 70-74 32.93915325 35.0 33.8 35.0 29.0 35.0 75-79 32.661109599999996 35.0 33.0 35.0 28.6 35.0 80-84 32.3579086 35.0 33.0 35.0 27.0 35.0 85-89 32.0393573 35.0 33.0 35.0 27.0 35.0 90-94 31.637423650000006 35.0 33.0 35.0 25.0 35.0 95-99 31.05573185 35.0 32.6 35.0 23.6 35.0 100-101 29.918015375000003 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 6679.0 3 1213.0 4 1669.0 5 1976.0 6 2642.0 7 3274.0 8 3928.0 9 4467.0 10 4887.0 11 4967.0 12 5130.0 13 5147.0 14 5268.0 15 5505.0 16 5845.0 17 6448.0 18 7210.0 19 8131.0 20 9393.0 21 11572.0 22 13767.0 23 16679.0 24 20282.0 25 24215.0 26 29885.0 27 36267.0 28 44681.0 29 54925.0 30 68501.0 31 88336.0 32 117323.0 33 166133.0 34 275458.0 35 667548.0 36 1400327.0 37 731946.0 38 122053.0 39 16277.0 40 46.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.23049044321101 22.756057537409678 13.552233921008423 26.461218098370892 2 31.411439933804548 24.054251449151526 19.13062668250327 25.40368193454066 3 28.72008397550781 19.583819904957174 20.941367243748118 30.754728875786896 4 31.003849066948952 19.343387399033283 19.41685184944315 30.235911684574617 5 31.428919435966478 20.613324802983687 19.810378130757954 28.14737763029188 6 29.719987475190475 19.055592347461424 17.58382718964082 33.64059298770728 7 32.88914929717283 18.72405333610865 19.01613702990787 29.37066033681065 8 28.595614396647317 19.51956618959635 19.84790708953571 32.03691232422062 9 30.7053054066107 17.85899297427404 19.16904035800821 32.266661261107046 10-14 30.87637157291535 19.241304544972756 19.109850234624435 30.77247364748746 15-19 31.06767281091813 18.79018562622054 18.947282481537005 31.19485908132432 20-24 30.9643413740039 18.875225614392274 18.988320360734985 31.172112650868844 25-29 31.162363960801525 18.996725492315132 18.86685440770779 30.974056139175556 30-34 31.263444272748565 18.723125834741598 18.712371917089396 31.30105797542044 35-39 31.095980712066968 18.826349339379092 18.863552697113406 31.214117251440538 40-44 31.233958300068743 18.877643200339485 18.781861184485592 31.10653731510618 45-49 31.344294947382224 18.661158073653937 18.646206645044934 31.348340333918905 50-54 31.167713587033084 18.7679598608316 18.801592207817798 31.262734344317515 55-59 31.25952685061003 18.84547260155152 18.768475170316247 31.126525377522203 60-64 31.371325 18.63367 18.62258 31.372425 65-69 31.171767292252493 18.752749705785543 18.803445042909537 31.27203795905243 70-74 31.295 18.84001 18.727545 31.137445000000003 75-79 31.387027119731375 18.627555639112593 18.608475300436584 31.376941940719448 80-84 31.212691171805716 18.744557306240104 18.763227970915764 31.27952355103842 85-89 31.314700000000002 18.836135000000002 18.73104 31.118125000000003 90-94 31.406715000000002 18.634855 18.59787 31.36056 95-99 31.214555704157842 18.72389834803456 18.777934180186374 31.283611767621224 100-101 31.425850292175728 18.93011445648265 18.688496187846486 30.95553906349514 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.6917085415819 2 56.81512186834521 3 59.4748128512947 4 61.23976075152356 5 59.576297066258356 6 63.36058046289775 7 62.25980963398348 8 60.63252672086794 9 62.97196666771775 10-14 61.64884522040281 15-19 62.26253189224246 20-24 62.13645402487275 25-29 62.13642009997709 30-34 62.564502248169006 35-39 62.3100979635075 40-44 62.34049561517493 45-49 62.69263528130112 50-54 62.430447931350606 55-59 62.38605222813223 60-64 62.74375 65-69 62.443805251304916 70-74 62.432445 75-79 62.76396906045082 80-84 62.49221472284413 85-89 62.432825 90-94 62.767275 95-99 62.49816747177906 100-101 62.38138935567087 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 161.0 1 107.5 2 48.0 3 41.5 4 42.5 5 43.0 6 45.0 7 43.5 8 41.5 9 51.0 10 56.0 11 52.0 12 57.5 13 74.0 14 98.0 15 128.0 16 159.5 17 195.5 18 225.0 19 269.5 20 348.5 21 442.0 22 582.0 23 718.0 24 871.0 25 1164.5 26 1477.0 27 1817.5 28 2256.5 29 2745.0 30 3342.0 31 3952.5 32 4624.0 33 5323.5 34 6093.0 35 6832.5 36 7507.5 37 8309.5 38 9136.5 39 9968.5 40 10704.5 41 11703.5 42 13035.5 43 14630.0 44 16909.0 45 19655.0 46 22906.0 47 27217.5 48 32702.0 49 39213.0 50 47066.5 51 55974.0 52 65876.5 53 76633.0 54 87980.5 55 99501.5 56 111406.0 57 123432.5 58 134724.5 59 146020.0 60 157172.5 61 167916.5 62 178216.5 63 187349.0 64 194539.0 65 199312.0 66 200516.5 67 198604.5 68 192853.5 69 182715.5 70 168750.5 71 151220.0 72 132057.0 73 111691.5 74 91655.0 75 72680.0 76 55372.0 77 40817.5 78 28756.0 79 19421.0 80 12589.5 81 7790.0 82 4552.5 83 2579.5 84 1445.5 85 839.0 86 518.5 87 339.5 88 238.5 89 184.5 90 153.5 91 124.5 92 95.0 93 70.5 94 59.0 95 47.5 96 33.0 97 23.0 98 15.0 99 12.0 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.08935 2 0.08377499999999999 3 0.0661 4 0.053700000000000005 5 0.043175 6 0.038400000000000004 7 0.07145 8 0.10382499999999999 9 0.10285 10-14 0.041315 15-19 0.052105 20-24 0.01746 25-29 0.020085 30-34 0.036430000000000004 35-39 0.022465000000000002 40-44 0.012545 45-49 0.009555000000000001 50-54 0.021845 55-59 0.016145 60-64 0.0 65-69 6.65E-4 70-74 0.0 75-79 0.001775 80-84 0.00356 85-89 0.0 90-94 0.0 95-99 0.0015400000000000001 100-101 0.0023875000000000003 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.22190458103015553 #Duplication Level Relative count 1 100.0 2 0.17581470832790697 3 0.0015026898147684354 4 0.0010017932098456237 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0010017932098456237 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 310460 3.2995427 3.9816432 1 TTTTT 298140 3.2936623 3.6514316 9 >>END_MODULE