##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L002_R2_008.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.67431225 34.0 31.0 34.0 31.0 34.0 2 32.83045425 34.0 31.0 34.0 31.0 34.0 3 32.88843425 34.0 33.0 34.0 31.0 34.0 4 36.23284875 37.0 37.0 37.0 35.0 37.0 5 36.24494825 37.0 37.0 37.0 35.0 37.0 6 36.2422975 37.0 37.0 37.0 35.0 37.0 7 36.230321 37.0 37.0 37.0 35.0 37.0 8 36.19485725 37.0 37.0 37.0 35.0 37.0 9 37.9667735 39.0 39.0 39.0 37.0 39.0 10-14 38.2211702 39.4 39.2 39.4 37.0 39.4 15-19 39.168245850000005 41.0 39.8 41.0 36.4 41.0 20-24 38.55326974999999 40.6 38.4 41.0 34.2 41.0 25-29 38.693602600000006 40.0 38.4 41.0 35.0 41.0 30-34 38.11377125 40.0 37.4 41.0 34.2 41.0 35-39 36.942748699999996 38.6 35.2 40.8 32.2 41.0 40-44 36.05202945 37.0 35.0 40.0 32.0 41.0 45-49 35.0757538 35.0 35.0 38.6 30.8 41.0 50-54 33.79376755 34.8 33.6 36.2 29.2 39.2 55-59 33.954647699999995 35.0 35.0 35.0 31.0 38.2 60-64 33.552015600000004 35.0 34.6 35.0 30.6 36.4 65-69 33.2243379 35.0 34.0 35.0 30.0 35.0 70-74 32.93842495 35.0 34.0 35.0 29.0 35.0 75-79 32.4856104 35.0 33.0 35.0 28.2 35.0 80-84 32.27616335 35.0 33.0 35.0 27.0 35.0 85-89 31.94589155 35.0 33.0 35.0 26.6 35.0 90-94 31.13128615 35.0 32.2 35.0 21.8 35.0 95-99 30.68659655 35.0 31.8 35.0 20.8 35.0 100-101 28.962308 34.0 30.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 9711.0 3 1341.0 4 1875.0 5 2213.0 6 2792.0 7 3331.0 8 3942.0 9 4448.0 10 4767.0 11 5076.0 12 5237.0 13 5290.0 14 5254.0 15 5479.0 16 5930.0 17 6509.0 18 7383.0 19 8248.0 20 9593.0 21 11562.0 22 13663.0 23 16263.0 24 19896.0 25 24107.0 26 28970.0 27 35692.0 28 42972.0 29 53738.0 30 66854.0 31 87349.0 32 117814.0 33 173155.0 34 309059.0 35 753173.0 36 1353768.0 37 666175.0 38 112740.0 39 14583.0 40 48.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.23956272284374 22.706994851614493 13.563501262802088 26.489941162739672 2 31.423080698703604 24.087103553419492 19.108845384080634 25.380970363796273 3 28.695554641454844 19.62803166883272 20.935273574680956 30.741140115031477 4 30.9565160796133 19.38347505888891 19.398018929561108 30.26198993193669 5 31.409135826943118 20.631126770011406 19.83914584903979 28.120591554005685 6 29.67966778063792 19.103614342050403 17.58846661865095 33.628251258660725 7 32.86486919594567 18.737004727374703 19.05762990264813 29.34049617403149 8 28.616890457788386 19.481763839599843 19.821915656677874 32.0794300459339 9 30.723015302454552 17.85978553017532 19.1415946715696 32.27560449580053 10-14 30.866552416435432 19.25032808275789 19.121897929285883 30.761221571520792 15-19 31.31665284435699 18.838791818994927 18.845915740281555 30.99863959636653 20-24 31.098087387263423 19.00821835557835 18.847959170909274 31.045735086248953 25-29 31.118120210247625 18.987472434758196 18.88944267187744 31.004964683116743 30-34 31.269137853405272 18.752408654318742 18.7040503830924 31.274403109183584 35-39 31.202922080846278 18.865502581773853 18.818648575135832 31.112926762244037 40-44 31.23803624717847 18.882575042146282 18.781098752760244 31.09828995791501 45-49 31.357943080666246 18.704717794973416 18.61353878064212 31.323800343718222 50-54 31.145448282377508 18.777201260505212 18.802596109118888 31.274754347998396 55-59 31.270346409170546 18.83917509742111 18.757021459310785 31.13345703409756 60-64 31.37167333184466 18.637976684560364 18.619516653178312 31.370833330416666 65-69 31.162515000000003 18.752355 18.78669 31.29844 70-74 31.290705000000003 18.824360000000002 18.741045 31.143890000000003 75-79 31.454729076139355 18.669305510328016 18.57969497212872 31.296270441403912 80-84 31.1876046309743 18.75572197710319 18.766679566381537 31.289993825540975 85-89 31.322121566106077 18.817905940895297 18.719115935955795 31.140856557042827 90-94 31.47655856754332 18.717175647004474 18.53374402363461 31.27252176181759 95-99 31.24759248832855 18.713619788904577 18.745964144072 31.292823578694872 100-101 31.598630060417843 19.056997994658342 18.666520947923765 30.67785099700005 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.72950388558342 2 56.80405106249987 3 59.43669475648633 4 61.21850601154999 5 59.529727380948806 6 63.307919039298646 7 62.20536536997716 8 60.696320503722276 9 62.998619798255085 10-14 61.627773987956225 15-19 62.31529244072351 20-24 62.14382247351238 25-29 62.123084893364364 30-34 62.543540962588864 35-39 62.315848843090315 40-44 62.33632620509347 45-49 62.681743424384464 50-54 62.4202026303759 55-59 62.40380344326811 60-64 62.74250666226132 65-69 62.460955 70-74 62.434595 75-79 62.75099951754326 80-84 62.477598456515274 85-89 62.46297812314891 90-94 62.749080329360915 95-99 62.54041606702343 100-101 62.2764810574179 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 92.0 1 62.5 2 27.5 3 28.5 4 33.0 5 31.0 6 32.0 7 36.5 8 46.0 9 46.0 10 49.0 11 70.0 12 88.5 13 104.5 14 146.0 15 208.5 16 245.0 17 268.0 18 335.5 19 407.0 20 450.5 21 544.0 22 665.0 23 815.5 24 990.5 25 1250.5 26 1570.0 27 1900.0 28 2343.5 29 2877.5 30 3407.0 31 3991.5 32 4690.0 33 5409.5 34 6120.5 35 6859.0 36 7606.0 37 8368.0 38 9108.0 39 9920.0 40 10870.5 41 11943.5 42 13305.0 43 14974.0 44 16974.0 45 19567.5 46 22999.5 47 27499.5 48 32884.0 49 39328.0 50 47192.5 51 56049.0 52 65744.5 53 76580.5 54 88289.5 55 99641.0 56 111340.5 57 123054.5 58 134242.5 59 146146.5 60 157841.5 61 168343.5 62 178530.5 63 187296.5 64 194105.0 65 199088.5 66 200480.0 67 198172.0 68 191874.5 69 181544.0 70 167404.0 71 150506.5 72 131693.0 73 111300.0 74 91227.5 75 72343.5 76 55267.0 77 40626.5 78 28877.5 79 19815.0 80 12893.0 81 7990.0 82 4733.0 83 2800.5 84 1629.5 85 990.5 86 682.0 87 486.0 88 354.0 89 269.0 90 213.0 91 173.5 92 144.5 93 111.5 94 92.0 95 83.5 96 67.0 97 47.5 98 33.5 99 23.0 100 16.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.1823 2 0.1694 3 0.144725 4 0.12975 5 0.1207 6 0.10215 7 0.156 8 0.198975 9 0.19575 10-14 0.10523500000000001 15-19 0.12523 20-24 0.07125000000000001 25-29 0.07116499999999999 30-34 0.09982 35-39 0.07257999999999999 40-44 0.065325 45-49 0.037305 50-54 0.07816000000000001 55-59 0.06529 60-64 1.7E-4 65-69 0.0 70-74 0.0 75-79 0.01176 80-84 0.023629999999999998 85-89 4.9999999999999996E-6 90-94 8.85E-4 95-99 0.013465 100-101 0.0357375 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.18842180495095673 #Duplication Level Relative count 1 100.0 2 0.1462149359558551 3 5.007360820405997E-4 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 5.007360820405997E-4 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 294835 3.2806048 3.7247012 10-14 AAAAA 309815 3.2736733 4.0937395 1 >>END_MODULE