##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L002_R2_007.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.426978 34.0 31.0 34.0 31.0 34.0 2 32.59572075 34.0 31.0 34.0 31.0 34.0 3 32.64584675 34.0 31.0 34.0 31.0 34.0 4 36.04095925 37.0 37.0 37.0 35.0 37.0 5 36.034155 37.0 37.0 37.0 35.0 37.0 6 36.05404625 37.0 37.0 37.0 35.0 37.0 7 36.03718225 37.0 37.0 37.0 35.0 37.0 8 36.04724025 37.0 37.0 37.0 35.0 37.0 9 37.77127425 39.0 38.0 39.0 35.0 39.0 10-14 37.9977255 39.4 38.2 39.4 35.2 39.4 15-19 39.065057100000004 41.0 39.0 41.0 36.0 41.0 20-24 38.9085778 40.6 39.0 41.0 35.2 41.0 25-29 38.53096305 40.0 38.0 41.0 34.6 41.0 30-34 37.827011500000005 40.0 36.8 41.0 33.2 41.0 35-39 36.841950499999996 38.6 35.0 40.6 31.8 41.0 40-44 35.865070949999996 36.6 35.0 40.0 31.0 41.0 45-49 34.95206875 35.0 34.8 38.4 30.6 40.8 50-54 33.6590414 34.8 33.2 35.8 28.4 39.2 55-59 33.76971895 35.0 34.0 35.0 30.0 38.0 60-64 33.414033999999994 35.0 34.0 35.0 30.0 36.2 65-69 33.1175643 35.0 34.0 35.0 29.0 35.0 70-74 32.86253369999999 35.0 33.4 35.0 29.0 35.0 75-79 32.584570150000005 35.0 33.0 35.0 27.8 35.0 80-84 32.3006213 35.0 33.0 35.0 27.0 35.0 85-89 32.026103500000005 35.0 33.0 35.0 27.0 35.0 90-94 31.663834050000002 35.0 33.0 35.0 24.6 35.0 95-99 31.093298649999998 35.0 32.6 35.0 23.6 35.0 100-101 30.031969375 34.0 30.5 35.0 18.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 7121.0 3 1213.0 4 1596.0 5 2055.0 6 2566.0 7 3470.0 8 4251.0 9 4810.0 10 5076.0 11 5380.0 12 5538.0 13 5358.0 14 5449.0 15 5534.0 16 5767.0 17 6596.0 18 7460.0 19 8421.0 20 9981.0 21 11910.0 22 14286.0 23 17850.0 24 21439.0 25 26624.0 26 32350.0 27 39452.0 28 48627.0 29 59938.0 30 74252.0 31 95138.0 32 124681.0 33 173470.0 34 277657.0 35 649215.0 36 1376827.0 37 722706.0 38 119865.0 39 16018.0 40 53.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.174779823418106 22.75596137890701 13.602328721921822 26.46693007575306 2 31.409108849041694 24.07553909210835 19.134394303008794 25.38095775584116 3 28.69586212763402 19.664251364862363 20.943018560126504 30.69686794737711 4 30.957539325519324 19.369765617277075 19.44937390745067 30.22332114975293 5 31.397871207743083 20.648263720553405 19.84369067412589 28.11017439757762 6 29.715324999999996 19.04665 17.6259 33.612125 7 32.89575496144522 18.700975251087968 19.025883942395456 29.37738584507136 8 28.578704189856136 19.549561712745582 19.858863003355285 32.01287109404299 9 30.716840635263555 17.86779386815393 19.190380280475136 32.22498521610738 10-14 30.878407825190063 19.25745116906437 19.121747179367073 30.742393826378496 15-19 31.06851694249787 18.817530403666044 18.93391556078601 31.18003709305008 20-24 30.97271 18.87221 18.99329 31.16179 25-29 31.115579999999998 18.99855 18.89497 30.9909 30-34 31.269794196607442 18.790455613972796 18.713982681235823 31.22576750818394 35-39 31.084659999999996 18.83963 18.85915 31.216559999999998 40-44 31.232490000000002 18.888825 18.79169 31.086995 45-49 31.346345 18.685385 18.647949999999998 31.320320000000002 50-54 31.14497759475354 18.775351528866818 18.809946909416002 31.269723966963635 55-59 31.268738126873814 18.845376884537686 18.748791874879185 31.137093113709312 60-64 31.37895 18.647540000000003 18.63657 31.336940000000002 65-69 31.165558239061863 18.761564089675613 18.809194201606374 31.263683469656158 70-74 31.278270000000003 18.855615 18.73789 31.128224999999997 75-79 31.369235 18.637535 18.633765 31.359464999999997 80-84 31.170495 18.749015 18.791764999999998 31.288725 85-89 31.303985 18.845064999999998 18.72887 31.12208 90-94 31.393304999999998 18.636705 18.618705 31.351285 95-99 31.21248 18.75173 18.77153 31.26426 100-101 31.419262500000002 18.936475 18.691575 30.952687499999996 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.641709899171175 2 56.79006660488286 3 59.39273007501114 4 61.18086047527226 5 59.5080456053207 6 63.32745 7 62.27314080651657 8 60.59157528389913 9 62.941825851370936 10-14 61.620801651568556 15-19 62.24855403554794 20-24 62.1345 25-29 62.10648 30-34 62.49556170479138 35-39 62.30122 40-44 62.319485 45-49 62.666665 50-54 62.41470156171718 55-59 62.40583124058312 60-64 62.715889999999995 65-69 62.42924170871802 70-74 62.40649499999999 75-79 62.7287 80-84 62.45922 85-89 62.426064999999994 90-94 62.74459 95-99 62.47674 100-101 62.37195 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 127.0 1 96.5 2 55.5 3 51.0 4 49.0 5 46.0 6 53.0 7 65.0 8 71.0 9 71.0 10 77.0 11 88.0 12 93.5 13 103.5 14 118.5 15 138.0 16 167.0 17 184.5 18 224.5 19 264.5 20 344.5 21 447.5 22 568.5 23 731.0 24 886.5 25 1130.0 26 1440.0 27 1817.5 28 2292.0 29 2777.0 30 3295.0 31 3915.5 32 4618.0 33 5376.0 34 6089.5 35 6789.0 36 7605.5 37 8343.5 38 8997.5 39 9766.5 40 10747.5 41 11868.5 42 13176.5 43 14847.5 44 16891.0 45 19482.0 46 22917.0 47 27264.5 48 32688.5 49 39243.5 50 47062.5 51 55941.0 52 65871.0 53 76576.5 54 87713.5 55 99414.0 56 111178.5 57 122860.0 58 134567.5 59 146128.5 60 157279.5 61 168395.0 62 178960.0 63 187894.0 64 195099.0 65 199467.0 66 201058.5 67 199368.0 68 193122.5 69 182492.0 70 168438.0 71 151731.5 72 132120.5 73 111529.5 74 91609.0 75 72629.0 76 55150.5 77 40457.0 78 28626.0 79 19196.5 80 12322.5 81 7473.0 82 4291.0 83 2326.5 84 1201.5 85 668.5 86 402.5 87 247.5 88 170.0 89 122.5 90 95.0 91 76.0 92 64.0 93 49.5 94 35.5 95 30.5 96 19.5 97 11.5 98 9.5 99 7.0 100 2.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.14265 2 0.10867500000000001 3 0.0815 4 0.10462500000000001 5 0.11472500000000001 6 0.0 7 0.002675 8 0.0085 9 0.017875000000000002 10-14 0.00294 15-19 1.35E-4 20-24 0.0 25-29 0.0 30-34 0.003835 35-39 0.0 40-44 0.0 45-49 0.0 50-54 0.0011 55-59 9.999999999999999E-6 60-64 0.0 65-69 2.35E-4 70-74 0.0 75-79 0.0 80-84 0.0 85-89 0.0 90-94 0.0 95-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.1994202319072443 #Duplication Level Relative count 1 100.0 2 0.15825241259809397 3 0.0010015975480892022 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 5.007987740446011E-4 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 306895 3.2480447 4.106796 1 TTTTT 293565 3.2403219 3.7531908 9 >>END_MODULE