##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L002_R2_006.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.5384515 34.0 31.0 34.0 31.0 34.0 2 32.71347 34.0 31.0 34.0 31.0 34.0 3 32.73522925 34.0 31.0 34.0 31.0 34.0 4 36.12223075 37.0 37.0 37.0 35.0 37.0 5 36.12436925 37.0 37.0 37.0 35.0 37.0 6 36.1346175 37.0 37.0 37.0 35.0 37.0 7 36.14055425 37.0 37.0 37.0 35.0 37.0 8 36.13139375 37.0 37.0 37.0 35.0 37.0 9 37.86965475 39.0 39.0 39.0 35.0 39.0 10-14 38.1470369 39.4 38.4 39.4 35.4 39.4 15-19 39.218628349999996 41.0 39.4 41.0 36.0 41.0 20-24 38.97363700000001 41.0 39.0 41.0 35.6 41.0 25-29 38.640521250000006 40.2 38.2 41.0 34.8 41.0 30-34 37.949242149999996 40.0 37.2 41.0 33.4 41.0 35-39 36.949492299999996 38.6 35.0 40.8 32.6 41.0 40-44 35.94111635 36.6 35.0 40.0 31.2 41.0 45-49 35.010152999999995 35.0 34.8 38.4 30.6 41.0 50-54 33.70986555 34.8 33.4 36.0 28.6 39.2 55-59 33.8473154 35.0 34.8 35.0 30.4 38.0 60-64 33.4299912 35.0 34.0 35.0 30.0 36.2 65-69 33.0991417 35.0 34.0 35.0 29.2 35.0 70-74 32.825825699999996 35.0 33.4 35.0 29.0 35.0 75-79 32.50941425 35.0 33.0 35.0 27.8 35.0 80-84 32.202600600000004 35.0 33.0 35.0 27.0 35.0 85-89 31.9077548 35.0 33.0 35.0 26.2 35.0 90-94 31.443630050000003 35.0 33.0 35.0 24.2 35.0 95-99 30.851652950000005 35.0 32.0 35.0 22.0 35.0 100-101 29.598003 34.0 30.5 35.0 9.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 6686.0 3 1313.0 4 1855.0 5 2322.0 6 3008.0 7 3708.0 8 4428.0 9 4942.0 10 5214.0 11 5442.0 12 5538.0 13 5623.0 14 5594.0 15 5902.0 16 6342.0 17 7041.0 18 7823.0 19 8901.0 20 10246.0 21 12196.0 22 14505.0 23 17581.0 24 21179.0 25 25359.0 26 30924.0 27 37886.0 28 46511.0 29 57215.0 30 71261.0 31 91003.0 32 119492.0 33 169553.0 34 280460.0 35 667313.0 36 1375567.0 37 721770.0 38 122086.0 39 16140.0 40 71.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.27114961266703 22.719675953588688 13.572550054152208 26.43662437959207 2 31.431841461368354 24.055452457694397 19.143344427831916 25.369361653105333 3 28.6826437565007 19.641985256154413 20.930907441079956 30.74446354626494 4 31.004539051494756 19.364307403349507 19.42651432149006 30.204639223665673 5 31.44291219175248 20.606469522497168 19.824464650745064 28.126153635005284 6 29.691094902486892 19.10857735683042 17.565489986576736 33.63483775410595 7 32.85047657019536 18.741042266245984 19.032792371675228 29.375688791883427 8 28.56442785316703 19.541974344779764 19.831576798683393 32.062021003369814 9 30.713322010046827 17.863927392177725 19.16284413999906 32.25990645777638 10-14 30.86450495582811 19.2361259968946 19.13216918643318 30.767199860844112 15-19 31.125283932464193 18.833047886079267 18.920604824467816 31.121063356988728 20-24 30.966150685914457 18.889615888403547 18.988018342389438 31.156215083292558 25-29 31.113439854859198 18.99395870003297 18.89918556304214 30.993415882065694 30-34 31.26188465006579 18.764186437533166 18.716415282968573 31.25751362943247 35-39 31.106882137954774 18.82570974779035 18.85448607725677 31.21292203699811 40-44 31.24741560510016 18.885570418892225 18.779999605996966 31.087014370010653 45-49 31.34160863594709 18.68541169910507 18.634196064031194 31.338783600916653 50-54 31.16447822252908 18.767469368415643 18.78800009520337 31.280052313851908 55-59 31.261370538205185 18.848384140425186 18.753892264761454 31.136353056608172 60-64 31.371769999999998 18.65514 18.620965 31.352124999999997 65-69 31.16404 18.76465 18.79151 31.2798 70-74 31.276335 18.849805 18.747015 31.126844999999996 75-79 31.385705 18.68047 18.60024 31.333585000000003 80-84 31.20791744950094 18.748042497650996 18.77833753400504 31.265702518843025 85-89 31.317394999999998 18.828345 18.723480000000002 31.13078 90-94 31.438905000000002 18.64607 18.59282 31.322204999999997 95-99 31.244905 18.71499 18.75594 31.284165 100-101 31.459631028764168 18.967792048894495 18.678714121980487 30.893862800360854 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.7077739922591 2 56.80120311447369 3 59.427107302765634 4 61.20917827516044 5 59.56906582675777 6 63.32593265659284 7 62.22616536207879 8 60.62644885653684 9 62.97322846782322 10-14 61.63170481667222 15-19 62.24634728945292 20-24 62.12236576920702 25-29 62.10685573692489 30-34 62.51939827949826 35-39 62.319804174952885 40-44 62.33442997511081 45-49 62.68039223686374 50-54 62.444530536380995 55-59 62.39772359481336 60-64 62.723895 65-69 62.443839999999994 70-74 62.403180000000006 75-79 62.71929000000001 80-84 62.47361996834396 85-89 62.44817499999999 90-94 62.761109999999995 95-99 62.52907 100-101 62.353493829125014 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 122.0 1 81.0 2 38.5 3 36.0 4 31.5 5 33.0 6 38.5 7 37.5 8 38.0 9 43.5 10 47.0 11 52.0 12 63.0 13 76.0 14 96.0 15 119.5 16 131.5 17 153.5 18 191.5 19 246.5 20 330.0 21 450.0 22 556.5 23 689.0 24 895.0 25 1150.5 26 1462.5 27 1848.5 28 2296.5 29 2763.5 30 3333.0 31 3959.5 32 4611.5 33 5349.5 34 6085.5 35 6883.5 36 7696.0 37 8376.0 38 9102.5 39 9984.5 40 10901.0 41 11875.0 42 13110.5 43 14854.0 44 17035.5 45 19543.0 46 22942.5 47 27319.5 48 32699.5 49 39405.0 50 47321.0 51 56285.5 52 66101.5 53 76853.5 54 88222.5 55 99583.0 56 111454.0 57 123215.0 58 134676.5 59 146279.0 60 157321.0 61 167952.0 62 178392.0 63 187832.0 64 195022.5 65 199529.5 66 200616.5 67 198203.5 68 192232.0 69 181551.5 70 167309.5 71 150460.0 72 131267.0 73 111453.5 74 91494.0 75 72290.5 76 55475.0 77 41004.0 78 28976.5 79 19706.0 80 12763.0 81 7848.0 82 4631.0 83 2704.0 84 1568.5 85 907.0 86 590.5 87 418.5 88 307.5 89 231.5 90 177.0 91 148.5 92 124.0 93 94.5 94 83.5 95 64.0 96 45.0 97 38.0 98 26.5 99 15.5 100 7.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.21182499999999999 2 0.17575 3 0.15495 4 0.171875 5 0.17965 6 0.042925 7 0.051449999999999996 8 0.061275 9 0.0879 10-14 0.025789999999999997 15-19 0.013635000000000001 20-24 0.007575 25-29 0.00331 30-34 0.023350000000000003 35-39 0.00462 40-44 7.700000000000001E-4 45-49 0.00124 50-54 0.00354 55-59 0.0019850000000000002 60-64 0.0 65-69 0.0 70-74 0.0 75-79 0.0 80-84 1.1999999999999999E-4 85-89 0.0 90-94 0.0 95-99 0.0 100-101 0.0010125 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.20193538067818154 #Duplication Level Relative count 1 100.0 2 0.16778523489932887 3 0.0010017028949213663 4 5.008514474606832E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0010017028949213663 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 312585 3.3116262 4.09261 1 TTTTT 297760 3.2956293 3.719242 10-14 >>END_MODULE