##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L002_R2_004.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.70446525 34.0 31.0 34.0 31.0 34.0 2 32.878476 34.0 33.0 34.0 31.0 34.0 3 32.9128765 34.0 33.0 34.0 31.0 34.0 4 36.27179975 37.0 37.0 37.0 35.0 37.0 5 36.270234 37.0 37.0 37.0 35.0 37.0 6 36.25592575 37.0 37.0 37.0 35.0 37.0 7 36.24327125 37.0 37.0 37.0 35.0 37.0 8 36.22444975 37.0 37.0 37.0 35.0 37.0 9 38.00773275 39.0 39.0 39.0 37.0 39.0 10-14 38.30854655 39.4 39.2 39.4 37.0 39.4 15-19 39.4925615 41.0 40.0 41.0 37.0 41.0 20-24 39.289558449999994 41.0 39.6 41.0 36.4 41.0 25-29 38.90105930000001 40.6 38.8 41.0 35.2 41.0 30-34 38.2194511 40.0 37.4 41.0 34.4 41.0 35-39 37.224080300000004 39.0 35.2 40.8 33.0 41.0 40-44 36.21939385 37.0 35.0 40.0 32.2 41.0 45-49 35.290796 35.0 35.0 38.8 31.4 41.0 50-54 34.00230385 34.8 33.8 36.2 29.8 39.2 55-59 34.1268848 35.0 35.0 35.0 31.0 38.2 60-64 33.71898245 35.0 35.0 35.0 31.0 36.4 65-69 33.37989745 35.0 34.2 35.0 30.6 35.2 70-74 33.100207350000005 35.0 34.0 35.0 29.8 35.0 75-79 32.855233299999995 35.0 33.6 35.0 29.0 35.0 80-84 32.542551149999994 35.0 33.0 35.0 28.2 35.0 85-89 32.22358795 35.0 33.0 35.0 27.0 35.0 90-94 31.8608903 35.0 33.0 35.0 26.6 35.0 95-99 31.289235299999994 35.0 33.0 35.0 24.0 35.0 100-101 30.116999749999998 34.0 31.0 35.0 20.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 7301.0 3 1083.0 4 1509.0 5 1755.0 6 2283.0 7 2820.0 8 3370.0 9 3915.0 10 4052.0 11 4360.0 12 4428.0 13 4513.0 14 4646.0 15 4801.0 16 5357.0 17 6059.0 18 6560.0 19 7346.0 20 8517.0 21 10015.0 22 12138.0 23 14886.0 24 17737.0 25 21318.0 26 25956.0 27 31640.0 28 39613.0 29 48869.0 30 61639.0 31 79543.0 32 105736.0 33 152535.0 34 256621.0 35 654301.0 36 1452433.0 37 781128.0 38 131483.0 39 17671.0 40 63.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.26591159908246 22.752618599028857 13.556124859169994 26.42534494271869 2 31.37339083728531 24.082817306459884 19.113713831389386 25.43007802486542 3 28.722271501752157 19.63118715764601 20.910410315303036 30.736131025298803 4 31.002281462479033 19.318284792803457 19.396210979957477 30.283222764760044 5 31.43531709964322 20.587878225046012 19.7685674113498 28.20823726396096 6 29.715104253548795 19.012452917711755 17.574624080583536 33.6978187481559 7 32.92193842327759 18.669859029044886 19.01101395080395 29.39718859687357 8 28.59244370210789 19.48758732769365 19.817253912676566 32.1027150575219 9 30.77293093236942 17.804899802280243 19.152736259078022 32.269433006272315 10-14 30.880756847392554 19.206744143437433 19.108985589889475 30.80351341928054 15-19 31.08359531116539 18.78750613906907 18.93034852892362 31.198550020841925 20-24 30.970079105012736 18.83888242683781 18.9710768935151 31.219961574634354 25-29 31.137868278903134 18.96144513529426 18.872421399568434 31.028265186234172 30-34 31.270592781219957 18.704557325701916 18.714560365164008 31.310289527914115 35-39 31.11597313509595 18.791034275183797 18.841867154672986 31.25112543504727 40-44 31.247876168782597 18.864139042351745 18.759123218433313 31.12886157043235 45-49 31.38002401975215 18.635581214160247 18.60322999823284 31.38116476785476 50-54 31.1597435839577 18.744505418768455 18.77469543928056 31.321055557993283 55-59 31.264533508376353 18.826164640947066 18.733057114839603 31.176244735836978 60-64 31.374422730532647 18.616564367942594 18.60300876404044 31.406004137484324 65-69 31.19774136442649 18.71552976959387 18.775685717050045 31.311043148929596 70-74 31.31866813186681 18.80608188060819 18.710936871093686 31.164313116431313 75-79 31.399311090874804 18.63798894186681 18.595460353218332 31.367239614040056 80-84 31.22624283274239 18.712143647805448 18.75348775234671 31.308125767105448 85-89 31.32402585226207 18.81247609165802 18.68493493180653 31.178563124273374 90-94 31.41542108749602 18.607484755439 18.570653400045124 31.40644075701986 95-99 31.243981719432135 18.72207182703444 18.717890416226435 31.31605603730699 100-101 31.48170539950646 18.8666557046405 18.647569399941606 31.004069495911434 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.69125654180115 2 56.80346886215073 3 59.45840252705096 4 61.28550422723907 5 59.64355436360419 6 63.412923001704705 7 62.319127020151164 8 60.695158759629784 9 63.042363938641735 10-14 61.68427026667309 15-19 62.28214533200731 20-24 62.1900406796471 25-29 62.16613346513731 30-34 62.58088230913407 35-39 62.36709857014322 40-44 62.37673773921494 45-49 62.76118878760691 50-54 62.48079914195098 55-59 62.440778244213334 60-64 62.78042686801697 65-69 62.50878451335608 70-74 62.48298124829812 75-79 62.766550704914856 80-84 62.53436859984783 85-89 62.50258897653544 90-94 62.82186184451588 95-99 62.56003775673913 100-101 62.48577489541789 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 6.0 1 6.5 2 12.5 3 9.5 4 3.5 5 7.0 6 15.5 7 30.5 8 44.5 9 62.0 10 90.0 11 124.5 12 167.0 13 185.5 14 194.5 15 235.5 16 257.0 17 274.0 18 307.0 19 348.5 20 401.0 21 506.5 22 625.0 23 758.5 24 978.5 25 1215.5 26 1474.0 27 1808.0 28 2238.5 29 2719.0 30 3278.0 31 3893.5 32 4576.0 33 5320.5 34 6014.0 35 6674.5 36 7376.5 37 8248.0 38 9124.0 39 9875.5 40 10783.0 41 11879.5 42 13078.5 43 14650.0 44 16738.5 45 19437.0 46 22875.0 47 27294.0 48 32600.0 49 39049.0 50 46759.0 51 55880.0 52 66031.5 53 76476.5 54 87774.0 55 99547.0 56 111212.0 57 123260.5 58 135067.0 59 146072.0 60 156825.5 61 167567.0 62 178260.5 63 187327.0 64 194132.0 65 198610.0 66 200214.5 67 198364.0 68 192560.0 69 182562.5 70 168445.0 71 151208.0 72 131865.5 73 111726.5 74 91774.0 75 72798.0 76 55843.0 77 41471.0 78 29489.5 79 19888.0 80 12795.0 81 7990.5 82 4772.0 83 2713.5 84 1565.0 85 931.0 86 614.5 87 411.5 88 290.5 89 234.5 90 182.5 91 147.0 92 120.0 93 87.0 94 68.0 95 55.0 96 45.0 97 36.5 98 28.0 99 19.5 100 11.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.18994999999999998 2 0.1344 3 0.14447500000000002 4 0.12985 5 0.126425 6 0.18805 7 0.1993 8 0.22495 9 0.2123 10-14 0.146845 15-19 0.11718500000000001 20-24 0.079025 25-29 0.09406 30-34 0.130355 35-39 0.09419 40-44 0.06268 45-49 0.06558 50-54 0.066315 55-59 0.077895 60-64 0.004455 65-69 0.001575 70-74 9.999999999999999E-6 75-79 0.020195 80-84 0.034115 85-89 0.008749999999999999 90-94 0.00368 95-99 0.03374 100-101 0.0336875 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.25380457048072713 #Duplication Level Relative count 1 100.0 2 0.16779700069122347 3 0.003506205984592729 4 0.0015026597076825982 5 0.0 6 0.0015026597076825982 7 0.0010017731384550654 8 5.008865692275327E-4 9 0.0 10++ 0.0015026597076825982 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 283135 3.1533372 3.8291283 9 AAAAA 288870 3.0908372 3.8856373 1 >>END_MODULE