##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L002_R2_003.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.73710475 34.0 31.0 34.0 31.0 34.0 2 32.9025445 34.0 33.0 34.0 31.0 34.0 3 32.93992675 34.0 33.0 34.0 31.0 34.0 4 36.302138 37.0 37.0 37.0 35.0 37.0 5 36.30292725 37.0 37.0 37.0 35.0 37.0 6 36.283886 37.0 37.0 37.0 35.0 37.0 7 36.26625075 37.0 37.0 37.0 35.0 37.0 8 36.24131275 37.0 37.0 37.0 35.0 37.0 9 38.02647175 39.0 39.0 39.0 37.0 39.0 10-14 38.33957305 39.4 39.2 39.4 37.2 39.4 15-19 39.52596525 41.0 40.0 41.0 37.0 41.0 20-24 39.3315086 41.0 39.6 41.0 36.6 41.0 25-29 38.9427754 40.6 38.8 41.0 35.2 41.0 30-34 38.26094105 40.0 37.4 41.0 34.6 41.0 35-39 37.2882 39.0 35.2 41.0 33.0 41.0 40-44 36.286220750000005 37.0 35.0 40.0 32.6 41.0 45-49 35.34627065 35.0 35.0 38.8 31.4 41.0 50-54 34.04507315 34.8 33.8 36.2 29.8 39.2 55-59 34.165531050000006 35.0 35.0 35.0 31.0 38.2 60-64 33.789448799999995 35.0 35.0 35.0 31.0 36.4 65-69 33.462847249999996 35.0 34.6 35.0 31.0 35.2 70-74 33.19019915 35.0 34.0 35.0 30.0 35.0 75-79 32.928321600000004 35.0 33.8 35.0 29.2 35.0 80-84 32.64494520000001 35.0 33.0 35.0 29.0 35.0 85-89 32.32831555 35.0 33.0 35.0 27.4 35.0 90-94 31.978799700000003 35.0 33.0 35.0 27.0 35.0 95-99 31.43358895 35.0 33.0 35.0 24.4 35.0 100-101 30.360617625 34.0 31.5 35.0 21.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 7023.0 3 994.0 4 1361.0 5 1614.0 6 2070.0 7 2644.0 8 3200.0 9 3598.0 10 3832.0 11 4036.0 12 4177.0 13 4276.0 14 4357.0 15 4640.0 16 5008.0 17 5418.0 18 6158.0 19 7082.0 20 8174.0 21 9726.0 22 11800.0 23 14127.0 24 17359.0 25 20972.0 26 25336.0 27 31175.0 28 38126.0 29 47593.0 30 59746.0 31 77714.0 32 103455.0 33 149658.0 34 251611.0 35 639264.0 36 1462546.0 37 806297.0 38 135133.0 39 18625.0 40 75.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.23078140835559 22.727156591775667 13.581126405928357 26.460935593940388 2 31.44827420480052 24.039328741025212 19.122960764627063 25.389436289547206 3 28.67576849569468 19.60876355222686 20.921964508975403 30.793503443103056 4 31.010721805425796 19.31962172231122 19.398306524857166 30.271349947405817 5 31.437767300610105 20.575656441877452 19.826545348171752 28.160030909340694 6 29.70347161775444 19.038230966401663 17.554211786812882 33.70408562903101 7 32.87267417176908 18.691487190020027 19.036217608728595 29.399621029482304 8 28.634979183084862 19.474885015203927 19.824944966416044 32.06519083529516 9 30.663647845393584 17.862509146677628 19.17890400248589 32.2949390054429 10-14 30.858617965747325 19.22234556358863 19.126449055912826 30.79258741475122 15-19 31.07649009960812 18.78766290201586 18.941200345238993 31.19464665313703 20-24 30.96503938772896 18.8516865873575 18.982463654412708 31.200810370500832 25-29 31.116434839268898 18.972501003412102 18.908292638007946 31.002771519311057 30-34 31.268526912345813 18.722702122193166 18.7178610699096 31.290909895551415 35-39 31.111743281459503 18.80198548193273 18.84018591813027 31.246085318477494 40-44 31.25678973839097 18.86157992087142 18.76921971587179 31.112410624865817 45-49 31.34939192175894 18.648819840861382 18.642657299737547 31.35913093764214 50-54 31.161032326701594 18.750246406270858 18.789311181151085 31.29941008587646 55-59 31.273189137099166 18.816022463511054 18.752758779937547 31.158029619452233 60-64 31.377728826637295 18.620411172246705 18.6127861676717 31.389073833444296 65-69 31.15598 18.744325 18.78546 31.314235 70-74 31.3056 18.816740000000003 18.715055 31.162605 75-79 31.39178368172777 18.638627624247174 18.594542106944683 31.375046587080373 80-84 31.185156588331665 18.75009376397083 18.76326572659326 31.301483921104246 85-89 31.307029832926077 18.823087998874396 18.692347665486547 31.177534502712984 90-94 31.426 18.63371 18.558854999999998 31.381435000000003 95-99 31.23541812072871 18.740571726692547 18.72636367764522 31.297646474933522 100-101 31.429238039294237 18.906678749968428 18.680104338510496 30.983978872226835 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.69171700229598 2 56.837710494347725 3 59.46927193879774 4 61.28207175283161 5 59.597798209950795 6 63.40755724678545 7 62.27229520125138 8 60.70017001838003 9 62.95858685083648 10-14 61.65120538049854 15-19 62.27113675274515 20-24 62.1658497582298 25-29 62.119206358579945 30-34 62.55943680789723 35-39 62.357828599937 40-44 62.369200363256795 45-49 62.70852285940107 50-54 62.460442412578054 55-59 62.4312187565514 60-64 62.7668026600816 65-69 62.470214999999996 70-74 62.468205 75-79 62.766830268808135 80-84 62.48664050943591 85-89 62.48456433563906 90-94 62.807435 95-99 62.533064595662225 100-101 62.413216911521076 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 13.0 1 8.5 2 5.5 3 7.5 4 6.5 5 4.0 6 7.0 7 9.0 8 14.5 9 20.5 10 26.0 11 38.0 12 61.5 13 87.0 14 112.5 15 148.5 16 202.0 17 256.0 18 291.5 19 346.0 20 459.5 21 560.0 22 660.5 23 825.5 24 1019.0 25 1265.0 26 1528.0 27 1841.5 28 2236.0 29 2712.5 30 3325.0 31 3984.0 32 4644.5 33 5293.0 34 6043.0 35 6753.5 36 7596.0 37 8412.0 38 9029.5 39 9836.0 40 10771.5 41 11886.0 42 13155.0 43 14548.5 44 16610.0 45 19559.0 46 23032.5 47 27358.0 48 32779.5 49 39363.5 50 47374.0 51 56306.5 52 65974.5 53 76375.5 54 87614.5 55 99519.0 56 111095.0 57 122921.0 58 134906.5 59 146413.5 60 157733.5 61 167994.5 62 178148.5 63 187404.0 64 194412.5 65 199268.0 66 200809.5 67 198779.0 68 192299.0 69 181829.0 70 168226.0 71 150926.5 72 131528.0 73 111793.0 74 92015.5 75 72898.5 76 55601.5 77 40901.0 78 28878.5 79 19544.0 80 12640.0 81 7712.0 82 4525.5 83 2605.5 84 1406.5 85 818.0 86 522.5 87 358.5 88 257.0 89 191.5 90 153.5 91 117.5 92 98.0 93 96.0 94 73.0 95 47.0 96 47.0 97 36.0 98 25.5 99 15.0 100 11.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.19495 2 0.126475 3 0.14095 4 0.107775 5 0.094925 6 0.1647 7 0.190125 8 0.231375 9 0.23700000000000002 10-14 0.13713499999999998 15-19 0.11556999999999999 20-24 0.0704 25-29 0.0909 30-34 0.12502 35-39 0.07967500000000001 40-44 0.065185 45-49 0.041235 50-54 0.06342 55-59 0.06905 60-64 5.9999999999999995E-5 65-69 0.0 70-74 0.0 75-79 0.012515 80-84 0.014899999999999998 85-89 2.55E-4 90-94 0.0 95-99 0.02146 100-101 0.027325 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.27874077108289347 #Duplication Level Relative count 1 100.0 2 0.1768289017572685 3 0.002504658665117118 4 0.0 5 0.0 6 5.009317330234236E-4 7 5.009317330234236E-4 8 0.0 9 0.0 10++ 0.006011180796281082 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 287160 3.1762729 3.6644516 10-14 AAAAA 294160 3.1347036 4.1342387 1 >>END_MODULE