##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L002_R2_002.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.53307875 34.0 31.0 34.0 31.0 34.0 2 32.68275 34.0 31.0 34.0 31.0 34.0 3 32.74766625 34.0 31.0 34.0 31.0 34.0 4 36.13821125 37.0 37.0 37.0 35.0 37.0 5 36.14788875 37.0 37.0 37.0 35.0 37.0 6 36.1404485 37.0 37.0 37.0 35.0 37.0 7 36.14410275 37.0 37.0 37.0 35.0 37.0 8 36.113246 37.0 37.0 37.0 35.0 37.0 9 37.87190675 39.0 38.0 39.0 35.0 39.0 10-14 38.157021099999994 39.4 38.4 39.4 35.2 39.4 15-19 39.2938753 41.0 39.4 41.0 36.0 41.0 20-24 39.079667900000004 41.0 39.0 41.0 35.6 41.0 25-29 38.7039446 40.2 38.4 41.0 35.0 41.0 30-34 38.0327666 40.0 37.2 41.0 33.4 41.0 35-39 37.045491899999995 38.6 35.2 40.8 32.6 41.0 40-44 36.02911354999999 36.8 35.0 40.0 31.2 41.0 45-49 35.123343999999996 35.0 35.0 38.4 31.0 41.0 50-54 33.81274245 34.8 33.4 36.0 29.2 39.2 55-59 33.94580010000001 35.0 35.0 35.0 31.0 38.0 60-64 33.556802149999996 35.0 34.0 35.0 30.2 36.2 65-69 33.2286859 35.0 34.0 35.0 29.6 35.0 70-74 32.97190055 35.0 33.8 35.0 29.0 35.0 75-79 32.70562525 35.0 33.0 35.0 29.0 35.0 80-84 32.418699749999995 35.0 33.0 35.0 27.4 35.0 85-89 32.11517445 35.0 33.0 35.0 27.0 35.0 90-94 31.744774 35.0 33.0 35.0 25.2 35.0 95-99 31.172306049999996 35.0 33.0 35.0 23.8 35.0 100-101 30.037374 34.0 30.5 35.0 18.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 4558.0 3 1112.0 4 1585.0 5 1914.0 6 2339.0 7 3037.0 8 3701.0 9 4140.0 10 4555.0 11 4802.0 12 4793.0 13 4964.0 14 5069.0 15 4989.0 16 5498.0 17 6304.0 18 7223.0 19 8025.0 20 9458.0 21 11343.0 22 13632.0 23 16382.0 24 20275.0 25 24513.0 26 30200.0 27 36839.0 28 45739.0 29 56545.0 30 70975.0 31 89933.0 32 119250.0 33 167703.0 34 270709.0 35 645582.0 36 1401484.0 37 749469.0 38 124605.0 39 16693.0 40 63.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.21859193116377 22.74178076480747 13.57466777140359 26.46495953262517 2 31.394502467226708 24.10738556067896 19.14755152090998 25.350560451184357 3 28.715892891465916 19.63053301992568 20.903342837006665 30.750231251601747 4 31.029976194432823 19.307611374616336 19.380414565243072 30.281997865707773 5 31.431768653628932 20.601166983570476 19.82788331365668 28.139181049143907 6 29.76952900272643 19.017584231721653 17.60724380299657 33.60564296255534 7 32.9222900248137 18.684621386610107 19.021816490714315 29.371272097861876 8 28.599928986673866 19.477168765246407 19.849725993154397 32.07317625492533 9 30.722249573716947 17.834867351921677 19.161748400938222 32.28113467342315 10-14 30.87655321765372 19.22515940880183 19.117607265669196 30.780680107875252 15-19 31.07418457582789 18.799179080609292 18.94645844101836 31.180177902544454 20-24 30.983088803223964 18.84976957234798 18.967155026763415 31.19998659766464 25-29 31.12537327659874 18.96539436928026 18.895243799361268 31.01398855475973 30-34 31.268787821980126 18.729121446682047 18.70451784034055 31.297572890997273 35-39 31.11073970448068 18.806726507476252 18.856776384819543 31.225757403223525 40-44 31.276068286865886 18.869827855604 18.747523036108003 31.106580821422114 45-49 31.369536303031776 18.64501545336522 18.63191387200435 31.353534371598652 50-54 31.169827504598395 18.75488238054286 18.803180472888233 31.272109641970513 55-59 31.29825616680756 18.818204749573024 18.732124289522396 31.151414794097022 60-64 31.358539371837207 18.65794317513805 18.599743009267577 31.38377444375716 65-69 31.17623 18.756555 18.78345 31.283765000000002 70-74 31.309540000000002 18.81956 18.714285 31.156615 75-79 31.384919951755897 18.646303911165724 18.60797723820645 31.360798898871934 80-84 31.207639425409013 18.736885275862168 18.766036746553862 31.289438552174957 85-89 31.318588158870202 18.82011504158096 18.71022448663366 31.15107231291518 90-94 31.43534 18.633625000000002 18.58256 31.348474999999997 95-99 31.239410332300494 18.73103047839184 18.737480847030408 31.292078342277264 100-101 31.439659257927655 18.910679967751964 18.675632843941436 30.974027930378945 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.683551463788945 2 56.74506291841106 3 59.46612414306765 4 61.31197406014059 5 59.57094970277284 6 63.37517196528177 7 62.293562122675574 8 60.6731052415992 9 63.003384247140104 10-14 61.65723332552897 15-19 62.25436247837235 20-24 62.18307540088861 25-29 62.13936183135848 30-34 62.5663607129774 35-39 62.336497107704204 40-44 62.382649108288 45-49 62.723070674630435 50-54 62.441937146568904 55-59 62.44967096090458 60-64 62.74231381559437 65-69 62.459995 70-74 62.466155 75-79 62.74571885062783 80-84 62.49707797758397 85-89 62.46966047178538 90-94 62.783815 95-99 62.53148867457775 100-101 62.4136871883066 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 32.0 1 19.5 2 6.5 3 6.5 4 7.5 5 8.0 6 9.5 7 11.0 8 15.0 9 19.5 10 21.0 11 26.5 12 37.0 13 52.5 14 72.0 15 92.0 16 114.5 17 147.0 18 187.5 19 238.5 20 294.0 21 381.0 22 515.0 23 670.0 24 836.0 25 1063.0 26 1389.0 27 1758.5 28 2178.5 29 2640.0 30 3155.0 31 3817.5 32 4518.5 33 5252.5 34 5972.0 35 6701.5 36 7517.5 37 8304.0 38 9005.0 39 9712.5 40 10637.0 41 11724.0 42 12959.5 43 14662.5 44 16802.0 45 19418.5 46 22919.0 47 27366.5 48 32735.0 49 39271.0 50 46975.0 51 55903.0 52 65912.0 53 76457.5 54 87480.5 55 99551.5 56 111488.0 57 123126.5 58 135404.0 59 147097.0 60 158136.0 61 169175.0 62 179127.5 63 187872.0 64 194991.5 65 199312.0 66 200934.0 67 199012.5 68 192527.5 69 182134.0 70 168605.5 71 151404.0 72 131622.5 73 111493.5 74 91385.0 75 72293.5 76 55452.0 77 40664.5 78 28624.0 79 19372.0 80 12491.0 81 7691.0 82 4499.0 83 2529.5 84 1384.5 85 799.0 86 478.5 87 315.0 88 228.5 89 178.5 90 142.5 91 101.0 92 73.5 93 71.0 94 57.0 95 42.5 96 35.5 97 26.5 98 19.5 99 10.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.157225 2 0.12065000000000001 3 0.1088 4 0.10740000000000001 5 0.11427500000000002 6 0.0525 7 0.065275 8 0.08917499999999999 9 0.0664 10-14 0.034535 15-19 0.026725000000000002 20-24 0.017425 25-29 0.022195 30-34 0.03498 35-39 0.019735 40-44 0.016205 45-49 0.01207 50-54 0.016755 55-59 0.01796 60-64 2.85E-4 65-69 0.0 70-74 0.0 75-79 0.004365 80-84 0.005045 85-89 5.05E-4 90-94 0.0 95-99 0.005715 100-101 0.009412499999999999 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.18843969929622253 #Duplication Level Relative count 1 100.0 2 0.15424138777186297 3 0.0020031349061280903 4 5.007837265320226E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 296950 3.15454 3.9979787 1 TTTTT 282470 3.1226017 3.6506193 10-14 >>END_MODULE