##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L002_R2_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.56355025 34.0 31.0 34.0 31.0 34.0 2 32.71498575 34.0 31.0 34.0 31.0 34.0 3 32.7737095 34.0 31.0 34.0 31.0 34.0 4 36.1464375 37.0 37.0 37.0 35.0 37.0 5 36.1448555 37.0 37.0 37.0 35.0 37.0 6 36.1433465 37.0 37.0 37.0 35.0 37.0 7 36.1425805 37.0 37.0 37.0 35.0 37.0 8 36.12911125 37.0 37.0 37.0 35.0 37.0 9 37.912989 39.0 39.0 39.0 35.0 39.0 10-14 38.2072468 39.4 39.0 39.4 35.4 39.4 15-19 39.35992055 41.0 40.0 41.0 36.6 41.0 20-24 39.14598135 41.0 39.0 41.0 35.8 41.0 25-29 38.7698872 40.4 38.4 41.0 35.0 41.0 30-34 38.0791731 40.0 37.2 41.0 33.8 41.0 35-39 37.1058665 38.8 35.2 40.8 32.8 41.0 40-44 36.062192550000006 36.8 35.0 40.0 31.6 41.0 45-49 35.0955004 35.0 35.0 38.4 30.8 41.0 50-54 33.7904584 34.8 33.4 36.2 29.2 39.2 55-59 33.96845525 35.0 35.0 35.0 31.0 38.2 60-64 33.56755705 35.0 34.4 35.0 30.4 36.4 65-69 33.24200365 35.0 34.0 35.0 29.8 35.0 70-74 32.9713548 35.0 34.0 35.0 29.0 35.0 75-79 32.68812435 35.0 33.2 35.0 29.0 35.0 80-84 32.375684 35.0 33.0 35.0 27.0 35.0 85-89 32.072628800000004 35.0 33.0 35.0 27.0 35.0 90-94 31.686761100000002 35.0 33.0 35.0 25.0 35.0 95-99 31.092584699999996 35.0 32.8 35.0 23.2 35.0 100-101 29.996562625 34.0 31.0 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 5079.0 3 1199.0 4 1594.0 5 1798.0 6 2488.0 7 3095.0 8 3793.0 9 4147.0 10 4561.0 11 4742.0 12 5032.0 13 5050.0 14 5112.0 15 5290.0 16 5710.0 17 6530.0 18 7167.0 19 8143.0 20 9475.0 21 11341.0 22 13623.0 23 16443.0 24 20123.0 25 24375.0 26 29739.0 27 36272.0 28 44470.0 29 55763.0 30 69806.0 31 88820.0 32 117385.0 33 166494.0 34 272094.0 35 639839.0 36 1391844.0 37 764875.0 38 128776.0 39 17836.0 40 77.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.232598623154715 22.693683882036968 13.608685680483163 26.465031814325158 2 31.41551902798628 24.059900024653103 19.153581815230005 25.370999132130613 3 28.690105418521526 19.645901182692455 20.911309213217557 30.752684185568462 4 31.005966698915934 19.349034100217896 19.412113065161723 30.232886135704444 5 31.414262002442765 20.588894804422033 19.85656571983339 28.140277473301804 6 29.673686457784022 19.05187143678421 17.611505706526295 33.66293639890547 7 32.881458269604046 18.70184005955799 19.069947095721847 29.346754575116112 8 28.611054847609086 19.501750455609184 19.798663179191927 32.08853151758981 9 30.73304370590953 17.875883686507596 19.18906824164718 32.202004365935686 10-14 30.86387231013689 19.22758476177782 19.131344443473786 30.777198484611507 15-19 31.04379391238937 18.818090496300726 18.951278926064866 31.186836665245043 20-24 30.952233781428873 18.860345439944485 18.999737049802807 31.187683728823835 25-29 31.09256090525529 18.98240794898897 18.89982768815677 31.025203457598966 30-34 31.26342294267922 18.744616065570295 18.715306451796863 31.27665453995362 35-39 31.096273940336538 18.827184495150984 18.861845864177543 31.21469570033494 40-44 31.237905420166932 18.874152663719087 18.797800452252716 31.090141463861258 45-49 31.349989022024104 18.643948215155127 18.63804295916228 31.368019803658488 50-54 31.153966547491063 18.76360727054529 18.807785583918793 31.274640598044854 55-59 31.262160011588904 18.833709971063243 18.754833814779243 31.14929620256861 60-64 31.344050000000003 18.649684999999998 18.639734999999998 31.366529999999997 65-69 31.164835000000004 18.775415000000002 18.770755 31.288994999999996 70-74 31.28823 18.839235 18.72846 31.144074999999997 75-79 31.37297705946559 18.656902985354478 18.600792901189354 31.36932705399058 80-84 31.190825044662397 18.741375716287124 18.77768164753426 31.29011759151622 85-89 31.313845 18.825185 18.724855 31.136114999999997 90-94 31.430165 18.642055 18.57696 31.350820000000002 95-99 31.23278427342721 18.719490444993625 18.755050654798865 31.292674626780297 100-101 31.448243637822276 18.90200129425437 18.671313015681427 30.978442052241927 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.697630437479866 2 56.78651816011689 3 59.44278960408999 4 61.23885283462038 5 59.55453947574457 6 63.336622856689495 7 62.22821284472017 8 60.6995863651989 9 62.93504807184522 10-14 61.6410707947484 15-19 62.23063057763441 20-24 62.13991751025271 25-29 62.11776436285425 30-34 62.54007748263284 35-39 62.31096964067147 40-44 62.3280468840282 45-49 62.71800882568259 50-54 62.42860714553592 55-59 62.41145621415751 60-64 62.71058000000001 65-69 62.453829999999996 70-74 62.432305 75-79 62.74230411345617 80-84 62.48094263617862 85-89 62.449960000000004 90-94 62.780985 95-99 62.52545890020751 100-101 62.4266856900642 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 9.0 1 7.0 2 6.0 3 5.0 4 4.0 5 7.5 6 6.5 7 6.0 8 8.5 9 11.0 10 13.5 11 23.5 12 33.5 13 44.0 14 52.0 15 64.5 16 101.0 17 135.0 18 178.0 19 226.0 20 285.0 21 383.5 22 501.5 23 662.0 24 882.5 25 1149.0 26 1461.5 27 1824.0 28 2218.0 29 2748.0 30 3325.5 31 3888.5 32 4613.5 33 5395.0 34 6090.5 35 6820.0 36 7598.5 37 8377.0 38 9127.0 39 9948.5 40 10883.0 41 11919.5 42 13199.0 43 14960.5 44 17150.0 45 19791.0 46 23327.5 47 27713.0 48 33018.0 49 39667.5 50 47360.5 51 56091.0 52 66047.5 53 77269.5 54 88490.0 55 99436.5 56 111298.0 57 123293.0 58 135073.0 59 146270.0 60 157202.0 61 168191.0 62 178346.0 63 187097.5 64 194476.5 65 199755.0 66 201039.0 67 198442.5 68 192086.5 69 181795.0 70 167886.0 71 150771.0 72 131240.0 73 110899.0 74 91077.0 75 72234.5 76 55332.0 77 40725.5 78 28720.0 79 19417.0 80 12591.5 81 7830.0 82 4701.5 83 2737.5 84 1540.5 85 927.5 86 634.5 87 441.0 88 318.0 89 252.5 90 181.5 91 141.5 92 113.0 93 90.5 94 73.5 95 56.0 96 45.0 97 35.0 98 26.0 99 19.0 100 12.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.261125 2 0.2154 3 0.200175 4 0.20445 5 0.215625 6 0.112175 7 0.13094999999999998 8 0.147425 9 0.11305 10-14 0.06787 15-19 0.04387 20-24 0.01909 25-29 0.01848 30-34 0.049859999999999995 35-39 0.018375 40-44 0.009445 45-49 0.004335 50-54 0.0075 55-59 0.007805 60-64 0.0 65-69 0.0 70-74 0.0 75-79 1.5000000000000001E-4 80-84 0.002565 85-89 0.0 90-94 0.0 95-99 5.9E-4 100-101 3.3749999999999996E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.20992232873836766 #Duplication Level Relative count 1 100.0 2 0.16678854418143388 3 0.004507798491390105 4 0.0 5 5.008664990433449E-4 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.001502599497130035 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 286120 3.1590931 3.8420105 10-14 AAAAA 293600 3.1203454 3.7972221 1 >>END_MODULE