##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L002_R1_011.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2592787 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.569958889796965 34.0 31.0 34.0 31.0 34.0 2 32.829485414729405 34.0 31.0 34.0 31.0 34.0 3 32.87571829078131 34.0 31.0 34.0 31.0 34.0 4 36.33179817701956 37.0 37.0 37.0 35.0 37.0 5 36.23540460516039 37.0 37.0 37.0 35.0 37.0 6 36.224778973359555 37.0 37.0 37.0 35.0 37.0 7 36.20767151331752 37.0 37.0 37.0 35.0 37.0 8 36.19668796549813 37.0 37.0 37.0 35.0 37.0 9 37.955630369945546 39.0 38.0 39.0 35.0 39.0 10-14 38.20955959745247 39.4 38.2 39.4 35.2 39.4 15-19 39.31106249761358 41.0 39.0 41.0 36.0 41.0 20-24 39.084919586529864 40.2 38.8 41.0 35.4 41.0 25-29 38.55840630179031 40.0 38.0 41.0 34.4 41.0 30-34 37.55179048645338 39.6 36.6 41.0 32.6 41.0 35-39 36.828866621130075 38.4 35.0 40.4 31.6 41.0 40-44 35.90625330966254 36.6 35.0 40.0 31.0 41.0 45-49 35.082833800076905 35.0 34.8 38.4 30.2 40.8 50-54 33.92378255521954 35.0 33.6 36.2 28.4 39.6 55-59 33.536877113314745 35.0 33.0 35.0 29.2 38.0 60-64 33.27236259669614 35.0 33.0 35.0 29.0 36.2 65-69 32.92601590489308 35.0 33.0 35.0 29.0 35.0 70-74 32.61189276249842 35.0 33.0 35.0 27.6 35.0 75-79 32.091256397073884 34.4 32.6 35.0 26.6 35.0 80-84 32.290352119167515 35.0 33.0 35.0 27.0 35.0 85-89 31.9993708700329 35.0 33.0 35.0 27.0 35.0 90-94 31.56536414290877 35.0 33.0 35.0 24.8 35.0 95-99 30.999134599178415 35.0 32.4 35.0 23.6 35.0 100-101 29.704289245510722 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 23.0 3 5.0 4 25.0 5 72.0 6 268.0 7 649.0 8 1483.0 9 2328.0 10 2958.0 11 3355.0 12 3459.0 13 3673.0 14 4000.0 15 4200.0 16 4477.0 17 4912.0 18 5360.0 19 5675.0 20 6486.0 21 7288.0 22 8892.0 23 10842.0 24 13680.0 25 17593.0 26 22123.0 27 27775.0 28 34948.0 29 43023.0 30 53890.0 31 67277.0 32 88465.0 33 122896.0 34 202942.0 35 477523.0 36 876407.0 37 395833.0 38 62135.0 39 5840.0 40 7.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.23905357670461 23.249023560296262 13.908412540085521 25.603510322913603 2 30.91603745313441 24.082926981661046 19.902097626993655 25.09893793821089 3 28.21180451768695 19.927282881316515 21.642541404288128 30.218371196708404 4 30.590634710834326 19.912318289161433 20.046613933192354 29.450433066811886 5 31.1940394640979 20.674239727366732 20.009858117924843 28.121862690610527 6 29.678411685958007 19.12332173834565 17.80620621747949 33.39206035821685 7 32.738593644599426 18.936920001527312 19.192089438893362 29.132396914979903 8 28.60906044345332 19.478653664955896 19.976612039477214 31.935673852113577 9 30.715288220744704 17.87420254729756 19.281144189630695 32.12936504232704 10-14 30.816839177302263 19.227364222359956 19.222496873055906 30.733299727281878 15-19 31.03982702782758 18.808610194358426 18.976946428688514 31.17461634912548 20-24 30.94164616245752 18.866587797203035 19.004100224697744 31.1876658156417 25-29 31.145037920626446 18.99862763887934 18.924382370000007 30.931952070494205 30-34 31.542221103086927 18.743974076544838 18.664858381439085 31.048946438929153 35-39 31.083094015533675 18.83910181886672 18.890359127547057 31.18744503805255 40-44 31.294584538070623 18.912855561450012 18.791942062744784 31.00061783773458 45-49 31.564706240813457 18.685576562980298 18.63546832038266 31.11424887582358 50-54 31.369158012334374 18.79615835659724 18.744029106603545 31.09065452446484 55-59 31.286333971899737 18.873204779258767 18.782028759014914 31.058432489826583 60-64 31.370935665242396 18.661981392412365 18.615085963895073 31.351996978450163 65-69 31.18064892877613 18.747208446056185 18.79043847935812 31.281704145809563 70-74 31.3026407491244 18.85282516458159 18.748450991153533 31.096083095140482 75-79 31.374771626053356 18.65109629136524 18.63467380853113 31.33945827405028 80-84 31.19286443342993 18.73522821520431 18.788884891464793 31.283022459900966 85-89 31.275701150131045 18.841555104422937 18.75590967357543 31.12683407187058 90-94 31.423507420947754 18.656160053939672 18.59967460307052 31.320657922042056 95-99 31.252910478184287 18.714310122659516 18.767912674662437 31.26486672449376 100-101 31.466738301295095 18.877293044125874 18.70842070713869 30.94754794744034 >>END_MODULE >>Per base GC content warn #Base %GC 1 62.84256389961822 2 56.0149753913453 3 58.43017571439536 4 60.04106777764622 5 59.31590215470843 6 63.07047204417486 7 61.87099055957933 8 60.54473429556689 9 62.84465326307175 10-14 61.55013890458414 15-19 62.214443376953064 20-24 62.129311978099224 25-29 62.076989991120655 30-34 62.59116754201608 35-39 62.270539053586226 40-44 62.295202375805204 45-49 62.678955116637034 50-54 62.45981253679922 55-59 62.34476646172632 60-64 62.722932643692566 65-69 62.4623530745857 70-74 62.39872384426488 75-79 62.71422990010363 80-84 62.4758868933309 85-89 62.40253522200163 90-94 62.74416534298981 95-99 62.51777720267805 100-101 62.41428624873543 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.5 3 0.5 4 0.0 5 0.5 6 1.5 7 2.5 8 1.5 9 1.5 10 6.0 11 11.0 12 15.0 13 22.5 14 33.5 15 43.5 16 52.5 17 71.0 18 92.0 19 123.0 20 172.0 21 235.0 22 299.5 23 390.0 24 544.0 25 695.5 26 879.0 27 1149.0 28 1439.5 29 1751.5 30 2120.5 31 2555.0 32 2986.0 33 3447.0 34 3936.0 35 4434.0 36 4926.0 37 5423.0 38 5977.5 39 6512.5 40 7021.0 41 7694.0 42 8571.5 43 9653.5 44 11090.5 45 12921.5 46 15170.5 47 17889.0 48 21501.5 49 25948.0 50 30937.5 51 36710.0 52 43266.0 53 50330.0 54 57634.0 55 64930.0 56 72907.0 57 80871.0 58 88127.5 59 95502.5 60 102658.0 61 109707.0 62 116565.5 63 122241.5 64 126700.0 65 129415.0 66 129979.5 67 128236.0 68 123903.5 69 117318.0 70 108532.5 71 97326.0 72 84520.0 73 71509.0 74 58646.5 75 46578.5 76 35462.0 77 25786.0 78 18058.5 79 12137.5 80 7770.5 81 4681.0 82 2694.0 83 1441.0 84 753.0 85 416.5 86 246.5 87 148.0 88 106.5 89 69.5 90 42.5 91 33.5 92 27.0 93 17.5 94 12.0 95 12.0 96 5.5 97 2.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.007906549978845158 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.0057312845212506855 25-29 0.0011262012652794079 30-34 0.07319536853586507 35-39 0.02955892635993624 40-44 0.020078780092618483 45-49 0.0 50-54 3.08548291857372E-5 55-59 0.0 60-64 0.00810710636855245 65-69 0.0055924377899148675 70-74 0.0 75-79 0.0 80-84 2.3912492618946332E-4 85-89 1.619878532251203E-4 90-94 0.010066388021846761 95-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 2592787.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.10848210045342739 #Duplication Level Relative count 1 100.0 2 0.09108379709332586 3 0.0 4 0.0 5 0.0 6 0.0 7 5.004604235897025E-4 8 0.0 9 0.0 10++ 5.004604235897025E-4 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 186365 3.135006 3.65436 10-14 AAAAA 189015 3.0593803 3.8383293 1 >>END_MODULE