##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L002_R1_010.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.7527035 34.0 31.0 34.0 31.0 34.0 2 32.9987325 34.0 31.0 34.0 31.0 34.0 3 33.06458225 34.0 33.0 34.0 31.0 34.0 4 36.46118125 37.0 37.0 37.0 35.0 37.0 5 36.39657 37.0 37.0 37.0 35.0 37.0 6 36.374352 37.0 37.0 37.0 35.0 37.0 7 36.375482 37.0 37.0 37.0 35.0 37.0 8 36.3592785 37.0 37.0 37.0 35.0 37.0 9 38.16469675 39.0 39.0 39.0 37.0 39.0 10-14 38.42545705 39.4 39.0 39.4 37.0 39.4 15-19 39.59911559999999 41.0 40.0 41.0 37.0 41.0 20-24 39.36347225 41.0 39.2 41.0 36.4 41.0 25-29 38.8059546 40.0 38.4 41.0 35.2 41.0 30-34 37.74173935 40.0 37.0 41.0 33.0 41.0 35-39 37.087014 38.6 35.2 40.6 32.6 41.0 40-44 36.1891801 36.8 35.0 40.0 32.0 41.0 45-49 35.523364099999995 35.0 35.0 39.0 32.2 41.0 50-54 34.606872800000005 35.0 35.0 36.6 31.2 40.0 55-59 33.681269199999996 35.0 34.0 35.0 30.0 38.0 60-64 33.345859399999995 35.0 34.0 35.0 29.8 36.2 65-69 32.9395446 35.0 33.0 35.0 29.0 35.0 70-74 32.596315000000004 35.0 33.0 35.0 28.2 35.0 75-79 32.12662315 34.6 32.6 35.0 27.0 35.0 80-84 32.2940945 35.0 33.0 35.0 27.0 35.0 85-89 31.197976500000003 35.0 32.0 35.0 21.6 35.0 90-94 31.19368345 35.0 32.4 35.0 23.8 35.0 95-99 30.884256649999998 35.0 32.4 35.0 22.2 35.0 100-101 29.450965 34.0 30.5 35.0 9.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 42.0 3 10.0 4 29.0 5 89.0 6 335.0 7 959.0 8 2107.0 9 3556.0 10 4511.0 11 5096.0 12 5309.0 13 5596.0 14 6195.0 15 6506.0 16 7425.0 17 8104.0 18 8906.0 19 9577.0 20 10337.0 21 11625.0 22 13737.0 23 16220.0 24 20135.0 25 24978.0 26 30755.0 27 38145.0 28 47538.0 29 59001.0 30 74379.0 31 94891.0 32 126395.0 33 181418.0 34 310921.0 35 742367.0 36 1355419.0 37 648954.0 38 107144.0 39 11269.0 40 20.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.437489140367084 23.03812215540119 13.781877319586341 25.742511384645383 2 31.075975 24.0345 19.764 25.125525 3 28.303099999999997 19.814899999999998 21.564425 30.317575 4 30.704825000000003 19.7757 19.94355 29.575924999999998 5 31.263049999999996 20.633399999999998 20.016475 28.087075 6 29.68925 19.09 17.82175 33.399 7 32.77545 18.86365 19.151375 29.209524999999996 8 28.566125 19.500925 19.951375 31.981575 9 30.678975 17.8664 19.26455 32.190075 10-14 30.839585000000003 19.22503 19.190335 30.745050000000003 15-19 31.07168 18.813255 18.94548 31.169584999999998 20-24 30.94344766423005 18.868698265500086 19.003418356034867 31.184435714234997 25-29 31.199076833583995 18.9835469356512 18.90544139281768 30.911934837947125 30-34 31.573555192316082 18.709783605622818 18.66345455950275 31.05320664255835 35-39 31.085956754833955 18.825923971943478 18.874435087336014 31.213684185886553 40-44 31.285186999555727 18.875384237784452 18.788400024564016 31.051028738095805 45-49 31.340459999999997 18.663050000000002 18.664415 31.332075 50-54 31.168225518693177 18.773039404951227 18.801429441858275 31.257305634497325 55-59 31.38614 18.854380000000003 18.74988 31.0096 60-64 31.388967773215658 18.639365565285864 18.61853443468413 31.353132226814353 65-69 31.241764167307462 18.73977076512489 18.775880786223325 31.24258428134432 70-74 31.367465 18.82995 18.72722 31.075364999999998 75-79 31.412785 18.61775 18.604545 31.36492 80-84 31.240350910965002 18.69343140693637 18.77545163249199 31.29076604960664 85-89 31.341123194112953 18.83205594218161 18.69683099982548 31.12998986387996 90-94 31.43561982059966 18.59514312546931 18.590952042912683 31.37828501101835 95-99 31.303609391082816 18.666840600052183 18.720010616003186 31.30953939286182 100-101 31.67675 18.836225000000002 18.60985 30.877175 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.18000052501247 2 56.2015 3 58.620675 4 60.280750000000005 5 59.350125 6 63.08825 7 61.984975 8 60.547700000000006 9 62.86905 10-14 61.584635 15-19 62.241265 20-24 62.12788337846504 25-29 62.11101167153112 30-34 62.626761834874436 35-39 62.2996409407205 40-44 62.336215737651536 45-49 62.672534999999996 50-54 62.42553115319049 55-59 62.395739999999996 60-64 62.74210000003001 65-69 62.48434844865179 70-74 62.44283000000001 75-79 62.777705 80-84 62.531116960571644 85-89 62.47111305799291 90-94 62.813904831618004 95-99 62.61314878394464 100-101 62.553925 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3.0 1 2.0 2 0.5 3 0.5 4 1.5 5 2.0 6 6.0 7 7.5 8 8.5 9 10.5 10 13.5 11 21.0 12 26.5 13 35.0 14 49.0 15 61.0 16 81.0 17 112.5 18 146.5 19 200.0 20 280.0 21 371.0 22 497.5 23 636.5 24 820.0 25 1089.0 26 1385.5 27 1755.5 28 2228.5 29 2695.5 30 3285.0 31 3875.5 32 4574.5 33 5404.0 34 6110.5 35 6825.0 36 7561.0 37 8391.0 38 9181.5 39 10041.5 40 10945.5 41 11970.0 42 13323.0 43 14863.0 44 16884.5 45 19702.5 46 23267.5 47 27692.5 48 33263.5 49 39949.0 50 47729.0 51 56718.5 52 66710.0 53 77181.5 54 88307.5 55 100295.0 56 112284.0 57 124042.0 58 135624.0 59 146563.0 60 157765.0 61 169253.0 62 179062.0 63 187262.0 64 194103.5 65 198212.0 66 199721.5 67 197626.5 68 191352.5 69 180749.0 70 166651.5 71 150188.0 72 130975.0 73 110799.0 74 90919.0 75 72231.5 76 55382.5 77 40904.0 78 29086.0 79 19694.5 80 12830.5 81 8003.0 82 4738.0 83 2774.0 84 1634.5 85 977.5 86 612.0 87 415.5 88 301.0 89 200.0 90 135.0 91 112.5 92 80.5 93 53.5 94 38.0 95 24.0 96 11.5 97 6.5 98 3.5 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.002375 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.00749 25-29 6.950000000000001E-4 30-34 0.08428 35-39 0.03322 40-44 0.01634 45-49 0.0 50-54 1.3000000000000002E-4 55-59 0.0 60-64 0.02943 65-69 0.013904999999999999 70-74 0.0 75-79 0.0 80-84 2.75E-4 85-89 0.01105 90-94 0.02583 95-99 2.9999999999999997E-5 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.1444841067482601 #Duplication Level Relative count 1 100.0 2 0.13117511878357607 3 0.0015020051769111765 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0010013367846074509 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 296365 3.2513702 3.6278067 10-14 AAAAA 293650 3.118091 3.995275 1 >>END_MODULE