##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L002_R1_006.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.77198875 34.0 31.0 34.0 31.0 34.0 2 33.005655 34.0 31.0 34.0 31.0 34.0 3 33.0327475 34.0 31.0 34.0 31.0 34.0 4 36.4427175 37.0 37.0 37.0 35.0 37.0 5 36.3812185 37.0 37.0 37.0 35.0 37.0 6 36.356125 37.0 37.0 37.0 35.0 37.0 7 36.36222 37.0 37.0 37.0 35.0 37.0 8 36.345678 37.0 37.0 37.0 35.0 37.0 9 38.156112 39.0 39.0 39.0 37.0 39.0 10-14 38.31914165 39.4 38.8 39.4 36.2 39.4 15-19 39.5160148 41.0 40.0 41.0 37.0 41.0 20-24 39.2892143 41.0 39.0 41.0 36.0 41.0 25-29 38.58814165 40.0 38.4 41.0 34.2 41.0 30-34 37.17047365 39.4 36.0 41.0 31.0 41.0 35-39 36.78146205 38.6 35.0 40.6 31.8 41.0 40-44 35.8169445 36.6 35.0 40.0 30.8 41.0 45-49 35.2309541 35.0 35.0 38.8 31.2 41.0 50-54 34.340138249999995 35.0 34.6 36.4 30.6 40.0 55-59 33.4006921 35.0 33.6 35.0 28.4 38.0 60-64 33.2501337 35.0 33.2 35.0 29.0 36.2 65-69 32.65043965 35.0 33.0 35.0 27.4 35.0 70-74 32.40451155 35.0 33.0 35.0 26.4 35.0 75-79 31.956190399999997 34.4 32.4 35.0 26.4 35.0 80-84 32.2407096 35.0 33.0 35.0 27.0 35.0 85-89 31.914631199999995 35.0 33.0 35.0 26.6 35.0 90-94 31.50939245 35.0 33.0 35.0 24.4 35.0 95-99 30.863990100000002 35.0 32.4 35.0 22.2 35.0 100-101 29.240007499999997 34.0 29.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 22.0 3 5.0 4 33.0 5 98.0 6 329.0 7 1063.0 8 2478.0 9 4019.0 10 5166.0 11 5690.0 12 5850.0 13 6211.0 14 6452.0 15 7077.0 16 7778.0 17 8347.0 18 8963.0 19 9512.0 20 10488.0 21 11713.0 22 13339.0 23 16188.0 24 20269.0 25 25338.0 26 31895.0 27 39972.0 28 50310.0 29 62449.0 30 79503.0 31 102696.0 32 138638.0 33 201579.0 34 339485.0 35 751643.0 36 1300983.0 37 613046.0 38 100637.0 39 10712.0 40 24.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.30141404229749 23.0998251795904 13.822565411365604 25.776195366746514 2 31.011925 24.031174999999998 19.83365 25.123250000000002 3 28.354625 19.788025 21.58785 30.2695 4 30.725 19.768774999999998 19.959925000000002 29.5463 5 31.2359 20.61625 20.04675 28.101100000000002 6 29.662274999999998 19.117975 17.823025 33.396724999999996 7 32.78785 18.864800000000002 19.167775000000002 29.179575000000003 8 28.544075000000003 19.4961 19.9698 31.990025 9 30.657899999999998 17.888975 19.2669 32.186225 10-14 30.91296745861583 19.236955198802956 19.17341013208064 30.676667210500568 15-19 31.043864999999997 18.794985 18.98813 31.17302 20-24 30.965399854338965 18.872693996127374 19.01526000834606 31.1466461411876 25-29 31.351831849513946 18.986321367609232 18.875533675468315 30.786313107408507 30-34 31.728102163400994 18.794931627168495 18.566157648106454 30.910808561324053 35-39 31.251896309840436 18.839374111106714 18.84030929473002 31.06842028432283 40-44 31.377520152116656 18.90679854803557 18.78592484930039 30.929756450547387 45-49 31.4316 18.68109 18.65317 31.23414 50-54 31.286580000000004 18.81285 18.776325 31.124245000000002 55-59 31.421335 18.90174 18.730605 30.94632 60-64 31.374526501821386 18.647008473624044 18.622355639780793 31.356109384773777 65-69 31.30560708874432 18.797878777271613 18.769185764505274 31.127328369478796 70-74 31.38878 18.864195 18.695505 31.05152 75-79 31.42997 18.622790000000002 18.612705 31.334535000000002 80-84 31.229590070642338 18.70696667755513 18.75190721010044 31.31153604170209 85-89 31.348554661226856 18.793776827006624 18.717552013409648 31.140116498356875 90-94 31.46279277646162 18.59117248104415 18.57310488382705 31.37292985866718 95-99 31.300602231683293 18.674972294462513 18.736468487488658 31.287956986365533 100-101 31.7189875 18.934575000000002 18.5864625 30.759975 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.077609409044 2 56.135175000000004 3 58.62412500000001 4 60.271300000000004 5 59.336999999999996 6 63.059 7 61.967425 8 60.5341 9 62.844125 10-14 61.5896346691164 15-19 62.216885 20-24 62.112045995526564 25-29 62.13814495692246 30-34 62.63891072472505 35-39 62.32031659416326 40-44 62.30727660266404 45-49 62.66574 50-54 62.410825 55-59 62.367655 60-64 62.73063588659517 65-69 62.43293545822311 70-74 62.44030000000001 75-79 62.76450500000001 80-84 62.541126112344436 85-89 62.48867115958373 90-94 62.835722635128796 95-99 62.588559218048836 100-101 62.4789625 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 9.0 1 6.0 2 2.5 3 2.5 4 3.5 5 4.0 6 4.0 7 5.0 8 7.5 9 8.5 10 14.5 11 24.0 12 26.0 13 33.5 14 47.5 15 61.5 16 74.5 17 108.5 18 150.5 19 209.5 20 283.5 21 346.0 22 479.0 23 637.5 24 834.5 25 1120.5 26 1407.5 27 1735.0 28 2166.5 29 2668.0 30 3206.0 31 3910.5 32 4623.5 33 5312.5 34 6104.5 35 6828.0 36 7622.5 37 8449.0 38 9154.0 39 10043.5 40 10868.5 41 11834.0 42 13172.5 43 14863.5 44 17114.5 45 19815.5 46 23373.0 47 27685.5 48 33046.0 49 39703.5 50 47506.5 51 56515.0 52 66655.0 53 77401.0 54 88528.5 55 100286.5 56 112310.5 57 124147.0 58 135343.5 59 146703.0 60 158270.5 61 169376.0 62 179434.5 63 187931.0 64 194668.5 65 199177.0 66 200721.0 67 197966.0 68 191057.5 69 180706.0 70 166973.5 71 149732.5 72 130292.5 73 110410.0 74 90341.0 75 71367.5 76 54688.5 77 40437.0 78 28799.0 79 19554.5 80 12727.5 81 8008.0 82 4839.0 83 2876.0 84 1712.5 85 1070.5 86 684.0 87 468.5 88 335.5 89 228.0 90 170.0 91 130.0 92 96.0 93 64.0 94 37.0 95 20.5 96 14.0 97 8.5 98 3.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.025974999999999998 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 1.0499999999999999E-4 15-19 0.0 20-24 7.1E-4 25-29 0.0024300000000000003 30-34 0.043265000000000005 35-39 0.019635 40-44 0.00306 45-49 0.0 50-54 0.0 55-59 0.0 60-64 0.011495 65-69 0.0105 70-74 0.0 75-79 0.0 80-84 0.001185 85-89 0.006315 90-94 0.014374999999999999 95-99 0.00194 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.14597956286119299 #Duplication Level Relative count 1 100.0 2 0.12866984419433652 3 0.0030039652341090238 4 5.00660872351504E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 292120 3.2101784 3.7286968 95-97 AAAAA 295390 3.127664 4.0112 1 >>END_MODULE