##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L002_R1_005.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.85474625 34.0 31.0 34.0 31.0 34.0 2 33.0783445 34.0 31.0 34.0 31.0 34.0 3 33.10821325 34.0 33.0 34.0 31.0 34.0 4 36.48390325 37.0 37.0 37.0 35.0 37.0 5 36.419479 37.0 37.0 37.0 35.0 37.0 6 36.38684575 37.0 37.0 37.0 35.0 37.0 7 36.383872 37.0 37.0 37.0 35.0 37.0 8 36.36686225 37.0 37.0 37.0 35.0 37.0 9 38.16762725 39.0 39.0 39.0 37.0 39.0 10-14 38.433941749999995 39.4 39.0 39.4 37.0 39.4 15-19 39.5960514 41.0 40.0 41.0 37.0 41.0 20-24 39.3729096 41.0 39.2 41.0 36.4 41.0 25-29 38.9404547 40.0 38.4 41.0 35.2 41.0 30-34 38.2356486 40.0 37.2 41.0 34.2 41.0 35-39 37.2287906 38.6 35.2 40.6 33.0 41.0 40-44 36.36127524999999 37.0 35.0 40.0 32.4 41.0 45-49 35.6514255 35.2 35.0 39.0 32.8 41.0 50-54 34.7863156 35.0 35.0 36.6 31.6 40.0 55-59 34.13843685 35.0 34.4 35.0 31.0 38.0 60-64 33.643977 35.0 34.0 35.0 30.6 36.2 65-69 33.284540250000006 35.0 33.6 35.0 30.0 35.0 70-74 33.0282278 35.0 33.0 35.0 29.2 35.0 75-79 32.3925536 34.4 32.6 35.0 28.0 35.0 80-84 32.7017439 35.0 33.0 35.0 29.0 35.0 85-89 32.4048585 35.0 33.0 35.0 27.8 35.0 90-94 32.036316899999996 35.0 33.0 35.0 27.0 35.0 95-99 31.5355631 35.0 33.0 35.0 25.6 35.0 100-101 30.347601875000002 34.0 31.0 35.0 21.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 27.0 3 7.0 4 27.0 5 82.0 6 250.0 7 731.0 8 1729.0 9 2538.0 10 3308.0 11 3721.0 12 3900.0 13 4065.0 14 4543.0 15 4972.0 16 5500.0 17 6191.0 18 6634.0 19 7149.0 20 7937.0 21 9049.0 22 10453.0 23 13083.0 24 16816.0 25 21191.0 26 26707.0 27 33670.0 28 42361.0 29 53194.0 30 67317.0 31 86185.0 32 114029.0 33 160371.0 34 263678.0 35 671838.0 36 1472314.0 37 740783.0 38 120797.0 39 12828.0 40 25.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.35360482835609 23.12113018335102 13.808768396669254 25.716496591623635 2 31.007075 24.009675 19.833724999999998 25.149525 3 28.337899999999998 19.796625000000002 21.551275 30.314200000000003 4 30.678725 19.807425000000002 19.972525 29.541325 5 31.19575 20.6037 20.0608 28.139750000000003 6 29.705474999999996 19.0942 17.757575 33.44275 7 32.811725 18.859375 19.150525 29.178375000000003 8 28.577325 19.485525 19.94425 31.992900000000002 9 30.6585 17.832925 19.286175 32.2224 10-14 30.853081706163408 19.23167846335693 19.173928347856695 30.74131148262296 15-19 31.059455000000003 18.7821 18.97345 31.184994999999997 20-24 30.95464 18.849725 18.994025 31.201610000000002 25-29 31.106181174037395 18.979831043732748 18.922997926436267 30.99098985579359 30-34 31.279449222621565 18.740466240963002 18.7158332988152 31.26425123760023 35-39 31.100175972625326 18.814203153264618 18.86363231743165 31.221988556678408 40-44 31.22904029593265 18.85704105554457 18.801390181825855 31.112528466696926 45-49 31.35475 18.65753 18.652214999999998 31.335505 50-54 31.149275 18.764085 18.812704999999998 31.273935 55-59 31.307040000000004 18.811980000000002 18.74792 31.13306 60-64 31.392976150829494 18.631318496574988 18.61236096854061 31.36334438405491 65-69 31.180844993549666 18.72511100013765 18.78786369151085 31.306180314801836 70-74 31.304245 18.821655 18.735950000000003 31.138149999999996 75-79 31.40214 18.621995 18.618904999999998 31.35696 80-84 31.19946628739016 18.727739264869083 18.769976845585266 31.302817602155493 85-89 31.323171933907222 18.797455255455255 18.720776615430538 31.158596195206982 90-94 31.42693129942073 18.595277621516864 18.60332175821416 31.37446932084825 95-99 31.246273103756188 18.672292775567286 18.749281125347135 31.332152995329388 100-101 31.462060279145305 18.862158381009237 18.67199226785309 31.003789071992365 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.07010141997972 2 56.1566 3 58.6521 4 60.22005 5 59.335499999999996 6 63.148225000000004 7 61.990100000000005 8 60.570225 9 62.8809 10-14 61.59439318878638 15-19 62.24444999999999 20-24 62.15625 25-29 62.09717102983099 30-34 62.5437004602218 35-39 62.322164529303734 40-44 62.34156876262957 45-49 62.69025499999999 50-54 62.42321 55-59 62.4401 60-64 62.7563205348844 65-69 62.4870253083515 70-74 62.442395 75-79 62.759100000000004 80-84 62.50228388954565 85-89 62.4817681291142 90-94 62.80140062026898 95-99 62.57842609908558 100-101 62.46584935113767 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3.0 1 2.5 2 1.0 3 0.5 4 2.5 5 3.5 6 4.0 7 3.0 8 3.5 9 7.5 10 9.0 11 11.5 12 21.5 13 33.0 14 42.5 15 58.0 16 75.5 17 101.5 18 140.0 19 191.0 20 260.5 21 344.5 22 472.5 23 620.5 24 820.0 25 1081.0 26 1374.0 27 1733.0 28 2131.0 29 2611.0 30 3225.0 31 3910.0 32 4605.0 33 5268.0 34 5985.5 35 6781.0 36 7452.5 37 8347.5 38 9140.0 39 9755.0 40 10728.0 41 11841.0 42 13247.5 43 14939.5 44 17014.0 45 19749.5 46 23310.5 47 27813.5 48 33284.5 49 39809.0 50 47624.0 51 56837.0 52 66847.0 53 77222.0 54 88513.0 55 100322.0 56 112064.0 57 123721.5 58 135439.0 59 147056.0 60 157974.5 61 168709.5 62 178811.5 63 187643.0 64 194613.5 65 199552.5 66 200862.5 67 197910.5 68 191530.0 69 181284.0 70 167618.0 71 150411.0 72 131396.5 73 111307.0 74 90822.5 75 71926.5 76 54852.5 77 40473.0 78 28843.5 79 19522.0 80 12492.0 81 7570.0 82 4377.5 83 2365.0 84 1266.5 85 711.0 86 411.5 87 254.5 88 159.5 89 102.0 90 77.5 91 51.0 92 34.5 93 25.5 94 14.5 95 6.0 96 2.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0073750000000000005 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 1.9999999999999998E-4 15-19 0.0 20-24 0.0 25-29 0.005484999999999999 30-34 0.052539999999999996 35-39 0.01854 40-44 0.0015699999999999998 45-49 0.0 50-54 0.0 55-59 0.0 60-64 0.03971 65-69 0.03616 70-74 0.0 75-79 0.0 80-84 0.006109999999999999 85-89 0.03083 90-94 0.051425 95-99 0.01734 100-101 0.0019000000000000002 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.14048876089912374 #Duplication Level Relative count 1 100.0 2 0.12967181515508047 3 0.002002653515908579 4 5.006633789771447E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 5.006633789771447E-4 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 279180 3.0545025 3.6730704 10-14 >>END_MODULE