##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L002_R1_004.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.9306845 34.0 31.0 34.0 31.0 34.0 2 33.1417945 34.0 33.0 34.0 31.0 34.0 3 33.1809785 34.0 34.0 34.0 31.0 34.0 4 36.5238565 37.0 37.0 37.0 35.0 37.0 5 36.467858 37.0 37.0 37.0 35.0 37.0 6 36.44991725 37.0 37.0 37.0 35.0 37.0 7 36.4373435 37.0 37.0 37.0 35.0 37.0 8 36.42234675 37.0 37.0 37.0 35.0 37.0 9 38.2344005 39.0 39.0 39.0 37.0 39.0 10-14 38.5018342 39.4 39.2 39.4 37.2 39.4 15-19 39.66977584999999 41.0 40.0 41.0 37.0 41.0 20-24 39.43494215 41.0 39.4 41.0 36.6 41.0 25-29 38.98026455 40.2 38.6 41.0 35.2 41.0 30-34 38.2130181 40.0 37.4 41.0 34.2 41.0 35-39 37.185866 38.6 35.2 40.6 32.8 41.0 40-44 36.3121234 37.0 35.0 40.0 32.4 41.0 45-49 35.626487049999994 35.2 35.0 39.0 32.8 41.0 50-54 34.71396609999999 35.0 35.0 36.6 31.4 40.0 55-59 34.015916100000005 35.0 34.2 35.0 31.0 38.0 60-64 33.51300725 35.0 34.0 35.0 30.2 36.2 65-69 33.1038346 35.0 33.2 35.0 29.4 35.0 70-74 32.82229554999999 35.0 33.0 35.0 29.0 35.0 75-79 32.1370773 34.4 32.6 35.0 27.4 35.0 80-84 32.42358365 35.0 33.0 35.0 28.0 35.0 85-89 32.075730750000005 35.0 33.0 35.0 27.0 35.0 90-94 31.6317366 35.0 33.0 35.0 25.2 35.0 95-99 31.04363115 35.0 32.6 35.0 23.8 35.0 100-101 29.631221625000002 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 24.0 3 9.0 4 22.0 5 96.0 6 309.0 7 870.0 8 1852.0 9 3121.0 10 4009.0 11 4543.0 12 4788.0 13 4852.0 14 5486.0 15 5797.0 16 6518.0 17 7274.0 18 7664.0 19 8286.0 20 9154.0 21 10592.0 22 11984.0 23 14536.0 24 18022.0 25 22533.0 26 27999.0 27 34652.0 28 43171.0 29 53864.0 30 68029.0 31 87335.0 32 116204.0 33 165048.0 34 278550.0 35 701260.0 36 1437819.0 37 705931.0 38 115740.0 39 12030.0 40 27.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.32329472580503 23.073068229472604 13.787581324248974 25.81605572047339 2 31.045250000000003 23.974149999999998 19.783275 25.197325 3 28.334274999999998 19.76445 21.5589 30.342375 4 30.716450000000002 19.72325 19.878625 29.681675000000002 5 31.248725 20.65625 20.013775 28.08125 6 29.667949999999998 19.12865 17.782025 33.421375 7 32.830075 18.8513 19.169800000000002 29.148825000000002 8 28.570024999999998 19.508300000000002 19.9251 31.996575 9 30.713425 17.862025 19.232625 32.191925 10-14 30.840278176389447 19.236626931277705 19.175506845709585 30.747588046623264 15-19 31.048019999999998 18.79254 18.974815 31.184625 20-24 30.954369999999997 18.86025 18.987285 31.198095 25-29 31.105741131153586 18.972534315916995 18.91448713044046 31.00723742248896 30-34 31.2934900727061 18.725722107816356 18.734782852328376 31.246004967149172 35-39 31.082359348194466 18.82021588326531 18.870779845727657 31.226644922812568 40-44 31.233643439225347 18.862128380439227 18.783681889955908 31.12054629037952 45-49 31.355875 18.6602 18.641705 31.342219999999998 50-54 31.152466011432967 18.721845778428648 18.834141412898983 31.291546797239405 55-59 31.279780000000002 18.796395 18.75815 31.165674999999997 60-64 31.402017467080274 18.6185915947242 18.614364736174497 31.365026202021028 65-69 31.17254021233622 18.729573195650833 18.788058045863686 31.30982854614926 70-74 31.329425 18.817405 18.70999 31.143179999999997 75-79 31.424210000000002 18.62309 18.59422 31.35848 80-84 31.21677665108643 18.70019497965395 18.75941594912767 31.323612420131948 85-89 31.361446572623507 18.773310496995478 18.6927813929199 31.172461537461118 90-94 31.465744118578332 18.56977396948141 18.58363700519006 31.380844906750198 95-99 31.289376707908794 18.651870654474127 18.736457448261547 31.322295189355536 100-101 31.542304739327843 18.791356021231685 18.635300988456876 31.031038250983595 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.13935044627842 2 56.242574999999995 3 58.676649999999995 4 60.398125 5 59.329975000000005 6 63.089324999999995 7 61.9789 8 60.5666 9 62.905350000000006 10-14 61.58786622301271 15-19 62.232645 20-24 62.152465 25-29 62.11297855364254 30-34 62.53949503985526 35-39 62.30900427100704 40-44 62.35418972960486 45-49 62.698094999999995 50-54 62.44401280867237 55-59 62.445455 60-64 62.767043669101305 65-69 62.482368758485485 70-74 62.472605 75-79 62.782689999999995 80-84 62.540389071218385 85-89 62.533908110084624 90-94 62.846589025328534 95-99 62.61167189726433 100-101 62.573342990311446 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1.0 1 0.5 2 2.0 3 2.5 4 1.5 5 2.5 6 2.0 7 1.5 8 4.0 9 7.5 10 10.5 11 10.0 12 13.0 13 32.0 14 50.0 15 60.0 16 74.0 17 100.0 18 146.5 19 201.0 20 266.5 21 354.0 22 454.5 23 621.0 24 831.0 25 1092.5 26 1392.5 27 1729.0 28 2197.5 29 2721.0 30 3225.5 31 3908.0 32 4608.0 33 5245.5 34 5996.0 35 6774.0 36 7559.5 37 8284.5 38 9037.5 39 9777.5 40 10706.5 41 11807.5 42 13045.5 43 14758.0 44 16979.0 45 19714.5 46 23250.0 47 27943.5 48 33394.0 49 39750.0 50 47750.0 51 56811.0 52 66819.5 53 77644.0 54 88832.5 55 100248.0 56 111937.0 57 123907.0 58 135567.5 59 146819.0 60 157687.5 61 168739.0 62 178988.0 63 187566.5 64 194662.5 65 199116.0 66 200089.5 67 197523.0 68 191292.0 69 180917.5 70 166604.0 71 149602.5 72 130413.0 73 110369.0 74 90889.5 75 72378.0 76 55446.0 77 40848.0 78 29026.0 79 19841.0 80 12999.0 81 8073.5 82 4835.0 83 2860.5 84 1703.5 85 1016.0 86 642.5 87 419.0 88 286.0 89 206.0 90 150.0 91 117.0 92 81.5 93 48.5 94 30.5 95 23.5 96 16.5 97 7.5 98 3.0 99 1.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.025974999999999998 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 1.4E-4 15-19 0.0 20-24 0.0 25-29 0.003765 30-34 0.0634 35-39 0.017725 40-44 0.0019000000000000002 45-49 0.0 50-54 5.65E-4 55-59 0.0 60-64 0.04397 65-69 0.04249 70-74 0.0 75-79 0.0 80-84 0.01008 85-89 0.04235 90-94 0.057965 95-99 0.025765 100-101 0.0032249999999999996 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.13598436179839773 #Duplication Level Relative count 1 100.0 2 0.12265270261475537 3 5.006232759785933E-4 4 5.006232759785933E-4 5 5.006232759785933E-4 6 0.0 7 0.0 8 0.0 9 0.0 10++ 5.006232759785933E-4 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 280695 3.0807538 3.6216156 10-14 AAAAA 282525 3.0182729 3.8649364 1 >>END_MODULE