##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L002_R1_003.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.93746675 34.0 31.0 34.0 31.0 34.0 2 33.15251375 34.0 33.0 34.0 31.0 34.0 3 33.18313275 34.0 34.0 34.0 31.0 34.0 4 36.532631 37.0 37.0 37.0 35.0 37.0 5 36.47699525 37.0 37.0 37.0 35.0 37.0 6 36.451798 37.0 37.0 37.0 35.0 37.0 7 36.443437 37.0 37.0 37.0 35.0 37.0 8 36.423118 37.0 37.0 37.0 35.0 37.0 9 38.24100725 39.0 39.0 39.0 37.0 39.0 10-14 38.515671149999996 39.4 39.2 39.4 37.2 39.4 15-19 39.68584085 41.0 40.0 41.0 37.2 41.0 20-24 39.458416799999995 41.0 39.6 41.0 36.6 41.0 25-29 39.0037936 40.2 38.6 41.0 35.2 41.0 30-34 38.24988925 40.0 37.4 41.0 34.2 41.0 35-39 37.2172037 38.8 35.2 40.6 32.8 41.0 40-44 36.36371989999999 37.0 35.0 40.0 32.6 41.0 45-49 35.660706700000006 35.2 35.0 39.0 32.8 41.0 50-54 34.7613798 35.0 35.0 36.6 31.6 40.0 55-59 34.0632713 35.0 34.4 35.0 31.0 38.0 60-64 33.5474212 35.0 34.0 35.0 30.4 36.4 65-69 33.1513452 35.0 33.4 35.0 29.6 35.0 70-74 32.8882112 35.0 33.0 35.0 29.0 35.0 75-79 32.182482549999996 34.4 32.6 35.0 27.4 35.0 80-84 32.4742525 35.0 33.0 35.0 28.2 35.0 85-89 32.132754850000005 35.0 33.0 35.0 27.0 35.0 90-94 31.728603100000004 35.0 33.0 35.0 25.8 35.0 95-99 31.1580791 35.0 32.8 35.0 23.8 35.0 100-101 29.85703625 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 27.0 3 5.0 4 40.0 5 97.0 6 304.0 7 792.0 8 1830.0 9 2814.0 10 3727.0 11 4320.0 12 4558.0 13 4782.0 14 5270.0 15 5671.0 16 6148.0 17 7112.0 18 7847.0 19 8356.0 20 9294.0 21 10217.0 22 11986.0 23 13971.0 24 17371.0 25 21658.0 26 27648.0 27 34005.0 28 42821.0 29 52747.0 30 66397.0 31 85673.0 32 114609.0 33 162201.0 34 274563.0 35 684510.0 36 1443445.0 37 729448.0 38 120676.0 39 13041.0 40 19.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.364910783983774 23.027488664532676 13.801190880418385 25.80640967106517 2 31.061625 23.96415 19.795625 25.1786 3 28.346125 19.723325 21.5581 30.37245 4 30.754825000000004 19.755125 19.903399999999998 29.58665 5 31.269999999999996 20.595325 20.03075 28.103925 6 29.675425 19.0964 17.817425 33.41075 7 32.8244 18.836375 19.149525 29.189700000000002 8 28.59135 19.510625 19.960275 31.937749999999998 9 30.698175 17.8454 19.2712 32.185225 10-14 30.84548 19.220760000000002 19.191805000000002 30.741954999999997 15-19 31.045045 18.78892 18.970509999999997 31.195525000000004 20-24 30.941403854476018 18.862357320911915 19.008063304427306 31.188175520184764 25-29 31.10936520930255 18.9828004727235 18.941955170468262 30.965879147505692 30-34 31.26491427038823 18.741318017566996 18.739651737447293 31.254115974597486 35-39 31.077786884479362 18.83195375055829 18.88163803406667 31.20862133089568 40-44 31.227704118597366 18.88493217672003 18.804726254351927 31.08263745033068 45-49 31.35349 18.663555000000002 18.64807 31.334885 50-54 31.140445153645473 18.746242182051166 18.82884730182859 31.284465362474776 55-59 31.275344999999998 18.820195000000002 18.759124999999997 31.145335000000003 60-64 31.364782059753743 18.63862893011552 18.63596315650802 31.36062585362272 65-69 31.187324233760982 18.730672778619343 18.79188867160362 31.290114316016055 70-74 31.308615 18.814105 18.724674999999998 31.152605 75-79 31.394270000000002 18.627535 18.600755 31.37744 80-84 31.224870313352664 18.713976104923635 18.768921569250065 31.29223201247364 85-89 31.33008702200368 18.78315942070158 18.743351610548274 31.14340194674646 90-94 31.45086735792794 18.58569251828569 18.57481309144691 31.38862703233946 95-99 31.279747644266102 18.661620912138243 18.7344439153863 31.32418752820935 100-101 31.582636222021275 18.8335430438162 18.59612811031313 30.987692623849394 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.17132045504894 2 56.240225 3 58.718574999999994 4 60.341475 5 59.37392500000001 6 63.086175 7 62.014100000000006 8 60.5291 9 62.8834 10-14 61.587435 15-19 62.24057 20-24 62.12957937466078 25-29 62.07524435680825 30-34 62.51903024498571 35-39 62.28640821537505 40-44 62.31034156892804 45-49 62.68837499999999 50-54 62.42491051612025 55-59 62.42068 60-64 62.725407913376465 65-69 62.47743854977704 70-74 62.46122 75-79 62.771710000000006 80-84 62.5171023258263 85-89 62.47348896875015 90-94 62.839494390267404 95-99 62.60393517247545 100-101 62.57032884587067 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 8.0 1 5.0 2 1.0 3 0.0 4 2.0 5 3.5 6 3.5 7 3.5 8 4.5 9 7.0 10 9.5 11 12.5 12 17.5 13 26.5 14 33.0 15 53.0 16 84.0 17 107.5 18 147.5 19 217.0 20 297.0 21 377.5 22 491.0 23 667.5 24 833.0 25 1051.5 26 1362.0 27 1757.0 28 2188.5 29 2625.0 30 3200.5 31 3896.5 32 4598.0 33 5337.0 34 6031.0 35 6767.5 36 7636.0 37 8436.5 38 9141.0 39 9951.0 40 10857.0 41 11834.0 42 13181.5 43 14884.5 44 16942.0 45 19755.0 46 23350.5 47 27884.0 48 33294.0 49 39815.5 50 47579.0 51 56746.0 52 66969.0 53 77549.5 54 89038.0 55 100650.5 56 112297.0 57 123604.5 58 134956.5 59 147095.0 60 158681.0 61 168977.5 62 178878.5 63 187751.5 64 194134.0 65 198438.5 66 200191.5 67 197738.5 68 190930.5 69 180757.0 70 166986.0 71 149801.5 72 130552.0 73 110789.5 74 90873.0 75 71977.5 76 55365.0 77 40721.5 78 28744.5 79 19616.0 80 12729.0 81 7929.0 82 4707.0 83 2690.0 84 1567.0 85 948.0 86 594.5 87 379.0 88 267.5 89 196.5 90 132.0 91 94.5 92 73.0 93 46.0 94 30.0 95 20.0 96 9.0 97 5.5 98 5.5 99 1.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.01515 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 6.749999999999999E-4 25-29 7.4E-4 30-34 0.076825 35-39 0.018685 40-44 0.00115 45-49 0.0 50-54 1.45E-4 55-59 0.0 60-64 0.02902 65-69 0.03413 70-74 0.0 75-79 0.0 80-84 0.009945 85-89 0.03218 90-94 0.040690000000000004 95-99 0.01099 100-101 0.001025 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.14748893832962495 #Duplication Level Relative count 1 100.0 2 0.1381934708592029 3 0.0015021029441217705 4 0.0 5 5.007009813739235E-4 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 279670 3.051783 3.661185 10-14 >>END_MODULE