##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L002_R1_002.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.73892975 34.0 31.0 34.0 31.0 34.0 2 32.98512 34.0 31.0 34.0 31.0 34.0 3 33.04056925 34.0 31.0 34.0 31.0 34.0 4 36.4201875 37.0 37.0 37.0 35.0 37.0 5 36.34439475 37.0 37.0 37.0 35.0 37.0 6 36.31237425 37.0 37.0 37.0 35.0 37.0 7 36.31023625 37.0 37.0 37.0 35.0 37.0 8 36.29685825 37.0 37.0 37.0 35.0 37.0 9 38.08118 39.0 39.0 39.0 37.0 39.0 10-14 38.34659845 39.4 38.4 39.4 35.4 39.4 15-19 39.48920795 41.0 39.6 41.0 37.0 41.0 20-24 39.273144450000004 40.8 39.0 41.0 35.8 41.0 25-29 38.8201124 40.0 38.2 41.0 35.0 41.0 30-34 38.095112650000004 40.0 37.0 41.0 33.6 41.0 35-39 37.09591214999999 38.6 35.2 40.6 32.6 41.0 40-44 36.21722925 36.8 35.0 40.0 32.0 41.0 45-49 35.5014674 35.0 35.0 38.8 32.0 41.0 50-54 34.59027805 35.0 34.6 36.6 31.0 40.0 55-59 33.925723700000006 35.0 34.0 35.0 30.4 38.0 60-64 33.4394616 35.0 33.8 35.0 30.0 36.2 65-69 33.0362009 35.0 33.0 35.0 29.0 35.0 70-74 32.76011505 35.0 33.0 35.0 29.0 35.0 75-79 32.09528805 34.4 32.4 35.0 26.8 35.0 80-84 32.40226525 35.0 33.0 35.0 27.2 35.0 85-89 32.08931665 35.0 33.0 35.0 27.0 35.0 90-94 31.65832765 35.0 33.0 35.0 25.2 35.0 95-99 31.13041285 35.0 32.8 35.0 23.8 35.0 100-101 29.891600875 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 25.0 3 12.0 4 29.0 5 86.0 6 313.0 7 763.0 8 1944.0 9 3160.0 10 3909.0 11 4512.0 12 4838.0 13 4965.0 14 5469.0 15 5701.0 16 6593.0 17 7099.0 18 7961.0 19 8545.0 20 9324.0 21 10489.0 22 12219.0 23 15215.0 24 18804.0 25 23703.0 26 30335.0 27 37967.0 28 47721.0 29 59460.0 30 75440.0 31 96341.0 32 126175.0 33 175476.0 34 282246.0 35 672748.0 36 1408725.0 37 705407.0 38 114275.0 39 11982.0 40 24.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.24526890904475 23.166307554363932 13.864744509208323 25.72367902738299 2 30.9563 24.04805 19.870775 25.124875000000003 3 28.281875 19.820275000000002 21.5902 30.307650000000002 4 30.705675 19.83015 19.936575 29.5276 5 31.186275000000002 20.659525000000002 20.037025 28.117175 6 29.68025 19.0884 17.81035 33.421 7 32.77585 18.8856 19.179375 29.159174999999998 8 28.588599999999996 19.55365 19.94405 31.9137 9 30.695275 17.860875 19.2517 32.192150000000005 10-14 30.834969967089325 19.23951793142093 19.197192704980974 30.72831939650877 15-19 31.04185 18.80179 18.962195 31.194165 20-24 30.93719645119746 18.881969900508867 18.990980592726764 31.189853055566903 25-29 31.10387531813817 18.99122488157225 18.93162475641199 30.973275043877592 30-34 31.26103011797474 18.750570264602775 18.741641121480367 31.246758495942117 35-39 31.05793395082863 18.82011196963152 18.902774818469016 31.21917926107084 40-44 31.22693955490244 18.878538551596673 18.81316817571701 31.081353717783877 45-49 31.340154999999996 18.657294999999998 18.6676 31.33495 50-54 31.146424137329287 18.753532010982426 18.82616980753759 31.273874044150702 55-59 31.274705000000004 18.83311 18.768425 31.12376 60-64 31.386309480648393 18.642079706756746 18.620976594047622 31.350634218547235 65-69 31.181722233376934 18.729989970762436 18.790430442074086 31.297857353786547 70-74 31.29591 18.820045 18.728369999999998 31.155675 75-79 31.393379999999997 18.624945 18.61782 31.363855 80-84 31.18719951069671 18.733896733484514 18.77560371873701 31.303300037081765 85-89 31.331016513032928 18.798228855139225 18.707216272649692 31.163538359178155 90-94 31.441347970305827 18.60208164066708 18.573400293484948 31.383170095542145 95-99 31.26685656391061 18.677015309752754 18.75031939279018 31.30580873354646 100-101 31.53336171674472 18.853051845892576 18.64737628028477 30.966210157077935 >>END_MODULE >>Per base GC content warn #Base %GC 1 62.968947936427746 2 56.081175 3 58.589524999999995 4 60.233275 5 59.303450000000005 6 63.10125 7 61.935024999999996 8 60.5023 9 62.88742499999999 10-14 61.563289363598095 15-19 62.236015 20-24 62.127049506764365 25-29 62.077150362015765 30-34 62.50778861391686 35-39 62.27711321189947 40-44 62.30829327268632 45-49 62.675104999999995 50-54 62.420298181479986 55-59 62.398465 60-64 62.736943699195635 65-69 62.47957958716348 70-74 62.451585 75-79 62.757235 80-84 62.49049954777848 85-89 62.49455487221108 90-94 62.82451806584797 95-99 62.572665297457064 100-101 62.49957187382266 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 10.0 1 5.5 2 1.5 3 2.0 4 2.5 5 3.0 6 3.5 7 3.5 8 4.0 9 5.5 10 8.5 11 14.0 12 22.5 13 31.5 14 43.0 15 56.5 16 75.5 17 100.5 18 132.0 19 191.0 20 274.0 21 358.0 22 452.0 23 611.5 24 822.0 25 1068.5 26 1368.0 27 1718.5 28 2148.0 29 2698.5 30 3294.0 31 3868.0 32 4537.0 33 5300.0 34 6005.5 35 6736.5 36 7567.0 37 8386.0 38 9160.0 39 9880.0 40 10821.5 41 11972.0 42 13211.5 43 14737.0 44 16870.0 45 19677.0 46 23172.5 47 27821.5 48 33401.0 49 39954.0 50 47933.5 51 57215.0 52 66904.0 53 77427.5 54 89115.5 55 100593.5 56 112458.5 57 124277.0 58 135581.0 59 146940.5 60 158049.5 61 168627.5 62 178790.5 63 187722.5 64 194745.5 65 199300.0 66 200521.5 67 198256.0 68 191611.5 69 181090.0 70 167234.0 71 150321.5 72 130962.5 73 110690.5 74 90603.5 75 71458.5 76 54528.5 77 40085.5 78 28260.5 79 19067.0 80 12388.0 81 7710.0 82 4533.0 83 2534.0 84 1418.5 85 850.0 86 510.0 87 340.0 88 262.5 89 170.5 90 113.0 91 77.5 92 45.0 93 30.0 94 22.5 95 13.5 96 4.5 97 2.0 98 1.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.042874999999999996 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 5.35E-4 15-19 0.0 20-24 6.35E-4 25-29 2.0999999999999998E-4 30-34 0.0464 35-39 0.009495 40-44 5.75E-4 45-49 0.0 50-54 0.00385 55-59 0.0 60-64 0.014750000000000001 65-69 0.017325 70-74 0.0 75-79 0.0 80-84 0.0047599999999999995 85-89 0.013825 90-94 0.02213 95-99 0.00557 100-101 2.75E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.146488280937518 #Duplication Level Relative count 1 100.0 2 0.13468654085908985 3 0.002503467302213566 4 0.0010013869208854262 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 5.006934604427131E-4 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 282145 3.077374 3.6177578 9 AAAAA 284915 3.0123436 3.8723636 1 >>END_MODULE