##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002007_ItsyBitsy_ATTCCT_L002_R1_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.7713785 34.0 31.0 34.0 31.0 34.0 2 33.01090025 34.0 31.0 34.0 31.0 34.0 3 33.037923 34.0 31.0 34.0 31.0 34.0 4 36.42971725 37.0 37.0 37.0 35.0 37.0 5 36.36682025 37.0 37.0 37.0 35.0 37.0 6 36.3356145 37.0 37.0 37.0 35.0 37.0 7 36.320281 37.0 37.0 37.0 35.0 37.0 8 36.31746075 37.0 37.0 37.0 35.0 37.0 9 38.112006 39.0 39.0 39.0 37.0 39.0 10-14 38.3720364 39.4 38.6 39.4 36.2 39.4 15-19 39.5153622 41.0 40.0 41.0 37.0 41.0 20-24 39.29128325 40.8 39.0 41.0 36.0 41.0 25-29 38.84089555 40.0 38.4 41.0 35.0 41.0 30-34 38.084887099999996 40.0 37.0 41.0 33.4 41.0 35-39 37.0753609 38.6 35.2 40.6 32.6 41.0 40-44 36.2077406 36.8 35.0 40.0 31.8 41.0 45-49 35.45073615 35.0 35.0 39.0 31.8 41.0 50-54 34.548868600000006 35.0 34.8 36.6 31.0 40.0 55-59 33.87309115000001 35.0 34.0 35.0 30.4 38.0 60-64 33.3462496 35.0 33.8 35.0 29.8 36.2 65-69 32.94636345 35.0 33.0 35.0 29.0 35.0 70-74 32.664740949999995 35.0 33.0 35.0 28.8 35.0 75-79 31.940243350000003 34.4 32.4 35.0 26.4 35.0 80-84 32.23777775000001 35.0 33.0 35.0 27.0 35.0 85-89 31.88232175 35.0 33.0 35.0 26.4 35.0 90-94 31.48354475 35.0 33.0 35.0 24.4 35.0 95-99 30.90191375 35.0 32.4 35.0 22.6 35.0 100-101 29.739563125 34.0 30.5 35.0 10.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 35.0 3 9.0 4 31.0 5 116.0 6 335.0 7 899.0 8 2177.0 9 3584.0 10 4455.0 11 5150.0 12 5441.0 13 5821.0 14 6084.0 15 6528.0 16 7315.0 17 8217.0 18 8966.0 19 9556.0 20 10340.0 21 11556.0 22 13464.0 23 16187.0 24 19854.0 25 24857.0 26 31463.0 27 38525.0 28 48498.0 29 60203.0 30 75399.0 31 96599.0 32 127257.0 33 175959.0 34 282651.0 35 659485.0 36 1375967.0 37 720675.0 38 122188.0 39 14125.0 40 29.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.2257716438081 23.134819463075328 13.84237733401601 25.79703155910056 2 31.029075 24.05525 19.8105 25.105175000000003 3 28.306575000000002 19.832250000000002 21.5822 30.278975000000003 4 30.71325 19.788575 19.95445 29.543725 5 31.256024999999998 20.622475 20.0623 28.0592 6 29.6964 19.1228 17.793275 33.387525000000004 7 32.77895 18.891425 19.1722 29.157424999999996 8 28.5722 19.52595 19.936925 31.964925 9 30.703725 17.85825 19.300175 32.13785 10-14 30.805265449477808 19.27745469941846 19.215329587593256 30.701950263510476 15-19 31.02728 18.812175 18.990135 31.170409999999997 20-24 30.928854752974903 18.867263106262616 19.03800489905144 31.165877241711037 25-29 31.088054999999997 18.99096 18.96155 30.959435000000003 30-34 31.251521385928505 18.75453790004604 18.755598212573155 31.238342501452305 35-39 31.10575965583301 18.83209513774325 18.877902132637878 31.18424307378586 40-44 31.22063 18.893225 18.816005 31.070140000000002 45-49 31.351125000000003 18.670835 18.65983 31.31821 50-54 31.151962147063728 18.768827567779244 18.839127820860156 31.24008246429687 55-59 31.266090000000002 18.83583 18.778425000000002 31.119655 60-64 31.395057396862075 18.623050398981604 18.620795050755838 31.361097153400486 65-69 31.191144946318726 18.7555225938444 18.804751787396295 31.24858067244058 70-74 31.29766 18.816405 18.75563 31.130305000000003 75-79 31.404654999999998 18.62724 18.611050000000002 31.357055 80-84 31.227886096178846 18.712148444525738 18.776961643057085 31.28300381623833 85-89 31.3326337712464 18.794298542321172 18.72895462941145 31.144113057020977 90-94 31.4558193921776 18.588083176876616 18.595559891661154 31.360537539284632 95-99 31.306880340380218 18.68264379117029 18.71335633724036 31.297119531209137 100-101 31.551434565780223 18.843932283255114 18.636380000180004 30.96825315078466 >>END_MODULE >>Per base GC content warn #Base %GC 1 63.02280320290866 2 56.134249999999994 3 58.58555 4 60.256975000000004 5 59.315225000000005 6 63.083924999999994 7 61.936375 8 60.537125 9 62.841575000000006 10-14 61.507215712988284 15-19 62.19769000000001 20-24 62.09473199468595 25-29 62.04749 30-34 62.48986388738081 35-39 62.29000272961888 40-44 62.290769999999995 45-49 62.669335000000004 50-54 62.392044611360596 55-59 62.385745 60-64 62.75615455026256 65-69 62.4397256187593 70-74 62.42796499999999 75-79 62.76171 80-84 62.51088991241718 85-89 62.47674682826737 90-94 62.81635693146224 95-99 62.60399987158935 100-101 62.51968771656489 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 3.0 1 2.0 2 2.5 3 4.0 4 4.5 5 3.0 6 1.5 7 2.0 8 3.5 9 7.5 10 9.0 11 11.0 12 22.0 13 32.0 14 39.5 15 58.5 16 83.5 17 116.5 18 156.5 19 191.5 20 268.0 21 378.0 22 492.5 23 655.0 24 859.5 25 1120.5 26 1455.5 27 1798.0 28 2223.0 29 2731.5 30 3289.0 31 3960.5 32 4679.0 33 5397.5 34 6143.0 35 6962.0 36 7674.0 37 8352.5 38 9130.5 39 9991.0 40 10931.5 41 12091.5 42 13423.0 43 14905.0 44 17042.5 45 19902.0 46 23414.0 47 27868.5 48 33345.0 49 39930.0 50 47848.0 51 56891.0 52 66696.0 53 77511.5 54 89124.0 55 100616.0 56 112252.0 57 124233.0 58 135789.0 59 147023.0 60 158094.0 61 169311.0 62 179330.0 63 187438.0 64 194253.0 65 199053.5 66 200121.5 67 197194.5 68 191074.5 69 180726.5 70 166552.5 71 149346.5 72 130050.5 73 110070.0 74 90243.5 75 71626.0 76 54820.0 77 40260.0 78 28594.0 79 19535.5 80 12734.0 81 7984.5 82 4845.5 83 2884.0 84 1693.5 85 1004.5 86 629.5 87 441.5 88 297.0 89 196.5 90 146.0 91 112.0 92 68.0 93 36.0 94 32.5 95 25.0 96 14.0 97 7.5 98 3.5 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.050225 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 1.7999999999999998E-4 15-19 0.0 20-24 0.00105 25-29 0.0 30-34 0.029474999999999998 35-39 0.004355 40-44 0.0 45-49 0.0 50-54 3.5999999999999997E-4 55-59 0.0 60-64 0.01544 65-69 0.018675 70-74 0.0 75-79 0.0 80-84 0.004935 85-89 0.013640000000000001 90-94 0.022935 95-99 0.008289999999999999 100-101 0.0011 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.15448918575699208 #Duplication Level Relative count 1 100.0 2 0.14271049798452717 3 0.004005908715355149 4 5.007385894193936E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 5.007385894193936E-4 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 282545 3.086977 3.6239533 9 >>END_MODULE