Unaligned_filtered

Directories and files

Directories (mostly accessions/samples)

QC -- Quality Control from the FastQC program

Files .. if large you may wish to save them first

Size Name
16G 002006_Sedgewick_ACTGAT_R1_filtered.fastq
73K 002006_Sedgewick_ACTGAT_R1_filtered.fastq.phix.blastn
325M 002006_Sedgewick_ACTGAT_R1_filtered.fastq.random
189M 002006_Sedgewick_ACTGAT_R1_filtered.fastq.random2
51M 002006_Sedgewick_ACTGAT_R1_filtered.fastq.rrna.blastn
2K 002006_Sedgewick_ACTGAT_R1_filtered.fastq.stats
16G 002006_Sedgewick_ACTGAT_R2_filtered.fastq
2K 002006_Sedgewick_ACTGAT_R2_filtered.fastq.stats
220 do_blast.stderr.stdout.txt
2K phiX_blast.stats.html
2K phiX_blast.stats.html.all.html
1K phiX_blast.stats.nohead
485 phiX_blast.stats.txt
3K rRNA_blast.stats.html
3M rRNA_blast.stats.html.all.html
2K rRNA_blast.stats.nohead
2M rRNA_blast.stats.txt
0 rrna_summarize.stderr.stdout.txt

FastA, FastQ and SAM/BAM files in current directory and sub-directories

Files

Total Seqs/Reads Nucleotides Range Mean N50 File name
65,184,661 6,482,962,609 30-101 99 101 002006_Sedgewick_ACTGAT_R1_filtered.fastq
65,184,661 6,491,372,799 30-101 99 101 002006_Sedgewick_ACTGAT_R2_filtered.fastq