##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002006_Sedgewick_ACTGAT_L003_R2_007.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.4652925 34.0 31.0 34.0 31.0 34.0 2 32.63597725 34.0 31.0 34.0 31.0 34.0 3 32.67428525 34.0 31.0 34.0 31.0 34.0 4 36.0818575 37.0 37.0 37.0 35.0 37.0 5 36.02419425 37.0 37.0 37.0 35.0 37.0 6 35.9943015 37.0 37.0 37.0 35.0 37.0 7 36.03466675 37.0 37.0 37.0 35.0 37.0 8 36.03513675 37.0 37.0 37.0 35.0 37.0 9 37.772766 39.0 38.0 39.0 35.0 39.0 10-14 38.0055282 39.4 38.2 39.4 35.2 39.4 15-19 39.1236186 41.0 39.0 41.0 36.0 41.0 20-24 38.8561577 40.6 39.0 41.0 35.2 41.0 25-29 38.517968800000006 40.0 38.0 41.0 34.6 41.0 30-34 37.9216392 40.0 37.0 41.0 33.2 41.0 35-39 37.0015669 38.8 35.2 40.8 32.6 41.0 40-44 36.092790550000004 37.0 35.0 40.0 31.4 41.0 45-49 34.854034799999994 35.0 34.6 38.8 29.8 41.0 50-54 33.7243703 34.8 33.2 36.2 28.8 39.2 55-59 33.781249100000004 35.0 34.0 35.0 30.0 38.0 60-64 33.41043675 35.0 34.0 35.0 30.0 36.2 65-69 33.09580845 35.0 34.0 35.0 29.2 35.0 70-74 32.821838449999994 35.0 33.4 35.0 29.0 35.0 75-79 32.559734000000006 35.0 33.0 35.0 28.0 35.0 80-84 32.27447600000001 35.0 33.0 35.0 27.0 35.0 85-89 31.977888749999998 35.0 33.0 35.0 26.6 35.0 90-94 31.565286199999996 35.0 33.0 35.0 24.4 35.0 95-99 30.9827182 35.0 32.4 35.0 23.0 35.0 100-101 29.7637435 34.0 30.5 35.0 11.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 8200.0 3 1295.0 4 1729.0 5 2043.0 6 2670.0 7 3329.0 8 3984.0 9 4545.0 10 4903.0 11 5310.0 12 5380.0 13 5477.0 14 5464.0 15 5570.0 16 5915.0 17 6402.0 18 7317.0 19 8399.0 20 9895.0 21 11676.0 22 14372.0 23 17601.0 24 21008.0 25 25774.0 26 31680.0 27 38460.0 28 47326.0 29 59086.0 30 73543.0 31 94103.0 32 124277.0 33 175981.0 34 285352.0 35 654682.0 36 1356093.0 37 758757.0 38 103306.0 39 9037.0 40 59.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.35355639375231 24.42042447784721 13.556568897896376 23.669450230504108 2 30.470249243985354 24.90593138377268 19.142328437536364 25.481490934705608 3 29.379982085758176 19.971177085783197 21.402765198332673 29.24607563012595 4 30.619553192873912 19.866448418955514 19.90909682489626 29.604901563274318 5 31.21761810317032 21.125234723023706 20.05019264359846 27.60695453020751 6 29.356309951573195 19.548655572987116 17.51261730009301 33.58241717534668 7 32.59290861752418 18.976985567814598 19.48734357704781 28.94276223761342 8 28.321299865014787 19.849888430590305 19.89929952943003 31.929512174964874 9 30.552932133897436 18.240481737854687 19.242140441591363 31.96444568665651 10-14 30.498326499612748 19.66182654903575 19.500154525082486 30.339692426269018 15-19 30.692985662710758 19.205462375476102 19.331707914716972 30.769844047096168 20-24 30.62666820046581 19.24001086201997 19.3313833268794 30.80193761063481 25-29 30.757794096389862 19.367859394576676 19.278733401203112 30.595613107830346 30-34 30.887222964621543 19.12726241450548 19.087370060793543 30.898144560079437 35-39 30.713352223049643 19.191522276113446 19.2171268317336 30.877998669103306 40-44 30.853904981218278 19.252460073333957 19.156820570327202 30.736814375120563 45-49 30.97308438284388 19.05046148653539 19.07120886118971 30.90524526943102 50-54 30.755172107948493 19.12500968615749 19.171218097649174 30.948600108244843 55-59 30.861722464339834 19.20358175084138 19.129397203020414 30.805298581798368 60-64 31.0043708515298 19.046626666319334 18.965041637764575 30.983960844386292 65-69 30.796431645905002 19.11430050148698 19.146505628697234 30.942762223910787 70-74 30.89400930783444 19.21623610007357 19.103000681102518 30.78675391098947 75-79 30.996533882151994 19.02217675400964 18.991785720714503 30.989503643123868 80-84 30.800115066039446 19.12773860724682 19.12433783765266 30.947808489061075 85-89 30.93181237272495 19.213557685423073 19.084432633773055 30.770197308078924 90-94 31.030324648519436 19.031380450208722 18.95732033171253 30.98097456955931 95-99 30.830711112013553 19.104963237555697 19.143037501024 30.92128814940675 100-101 31.06867961440339 19.344466756632208 19.070331899835697 30.51652172912871 >>END_MODULE >>Per base GC content warn #Base %GC 1 62.02300662425642 2 55.951740178690955 3 58.62605771588413 4 60.224454756148226 5 58.824572633377834 6 62.93872712691988 7 61.53567085513759 8 60.250812039979664 9 62.51737782055395 10-14 60.83801892588176 15-19 61.46282970980692 20-24 61.428605811100624 25-29 61.35340720422021 30-34 61.78536752470097 35-39 61.59135089215295 40-44 61.59071935633884 45-49 61.8783296522749 50-54 61.70377221619333 55-59 61.6670210461382 60-64 61.9883316959161 65-69 61.73919386981579 70-74 61.680763218823905 75-79 61.98603752527586 80-84 61.74792355510051 85-89 61.70200968080387 90-94 62.011299218078754 95-99 61.751999261420295 100-101 61.58520134353209 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 98.0 1 67.0 2 24.5 3 16.0 4 17.5 5 18.0 6 18.5 7 26.5 8 33.0 9 30.0 10 45.0 11 59.5 12 84.0 13 120.5 14 154.0 15 188.0 16 235.0 17 289.5 18 335.5 19 385.0 20 447.0 21 511.5 22 576.5 23 649.5 24 788.5 25 918.0 26 1066.5 27 1284.0 28 1520.5 29 1806.0 30 2111.5 31 2417.0 32 2811.5 33 3302.0 34 3777.5 35 4331.0 36 4994.0 37 5650.0 38 6384.5 39 7354.0 40 8424.5 41 9755.5 42 11550.5 43 13657.5 44 16287.5 45 19925.5 46 24314.0 47 29881.0 48 37036.0 49 45483.0 50 55331.5 51 66605.5 52 79248.5 53 93160.5 54 107598.5 55 121483.5 56 135131.0 57 148659.5 58 160879.0 59 171266.0 60 180795.0 61 188438.5 62 193726.0 63 197311.5 64 198516.5 65 196075.0 66 190831.0 67 183318.0 68 172018.5 69 157978.0 70 142333.5 71 125188.0 72 107121.5 73 89365.0 74 72315.5 75 56489.5 76 42904.0 77 31618.0 78 22411.5 79 15144.5 80 9831.5 81 6197.5 82 3704.5 83 2152.0 84 1245.0 85 717.5 86 440.0 87 307.0 88 225.0 89 167.0 90 135.0 91 106.0 92 87.0 93 70.0 94 42.0 95 29.5 96 25.0 97 19.5 98 14.5 99 6.5 100 2.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.08312499999999999 2 0.092875 3 0.0795 4 0.11349999999999999 5 0.055075 6 0.1173 7 0.148525 8 0.17425 9 0.178075 10-14 0.097125 15-19 0.09548 20-24 0.073835 25-29 0.068435 30-34 0.10617 35-39 0.03732 40-44 0.05176 45-49 0.035545 50-54 0.050665 55-59 0.06005 60-64 3.5E-5 65-69 3.95E-4 70-74 3.7E-4 75-79 0.0034 80-84 0.02263 85-89 3.9999999999999996E-5 90-94 1.5999999999999999E-4 95-99 0.02433 100-101 0.017275 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.19337044180398807 #Duplication Level Relative count 1 100.0 2 0.1196513589690959 3 0.0030037998067555458 4 5.006333011259243E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.00350443310788147 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 316940 3.1928525 3.8381712 10-14 AAAAA 328140 3.1414685 4.092738 1 >>END_MODULE