##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002006_Sedgewick_ACTGAT_L003_R2_006.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.55280675 34.0 31.0 34.0 31.0 34.0 2 32.714679 34.0 31.0 34.0 31.0 34.0 3 32.76547225 34.0 31.0 34.0 31.0 34.0 4 36.1433425 37.0 37.0 37.0 35.0 37.0 5 36.1162665 37.0 37.0 37.0 35.0 37.0 6 36.14436325 37.0 37.0 37.0 35.0 37.0 7 36.14649025 37.0 37.0 37.0 35.0 37.0 8 36.1252785 37.0 37.0 37.0 35.0 37.0 9 37.8805755 39.0 39.0 39.0 35.0 39.0 10-14 38.0675011 39.4 38.6 39.4 35.4 39.4 15-19 39.27764155 41.0 39.8 41.0 36.4 41.0 20-24 38.5777581 40.6 38.6 41.0 34.4 41.0 25-29 38.58075715 40.0 38.0 41.0 35.0 41.0 30-34 38.05859585 40.0 37.4 41.0 33.8 41.0 35-39 36.8896793 38.8 35.2 40.6 32.0 41.0 40-44 36.046733849999995 37.0 35.0 40.0 31.4 41.0 45-49 35.11629675 35.2 35.0 38.8 31.0 41.0 50-54 33.83133084999999 35.0 33.2 36.2 28.8 39.2 55-59 33.8712853 35.0 34.6 35.0 30.2 38.2 60-64 33.492559500000006 35.0 34.0 35.0 30.0 36.4 65-69 33.1626479 35.0 34.0 35.0 29.8 35.0 70-74 32.8729819 35.0 33.8 35.0 29.0 35.0 75-79 32.468766 35.0 33.0 35.0 27.0 35.0 80-84 32.30581995 35.0 33.0 35.0 27.0 35.0 85-89 32.02291395 35.0 33.0 35.0 27.0 35.0 90-94 31.6148734 35.0 33.0 35.0 24.6 35.0 95-99 31.017242450000005 35.0 32.6 35.0 23.0 35.0 100-101 29.887228625 34.0 30.5 35.0 17.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 9346.0 3 1368.0 4 1807.0 5 2207.0 6 2797.0 7 3269.0 8 3966.0 9 4516.0 10 4756.0 11 5101.0 12 5054.0 13 5276.0 14 5450.0 15 5504.0 16 5782.0 17 6429.0 18 7232.0 19 8183.0 20 9470.0 21 11393.0 22 13453.0 23 16691.0 24 19824.0 25 24525.0 26 29432.0 27 36191.0 28 44843.0 29 55755.0 30 69725.0 31 89378.0 32 119572.0 33 170095.0 34 286952.0 35 676135.0 36 1371609.0 37 754836.0 38 103134.0 39 8871.0 40 73.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.279047311795125 24.497399932373465 13.561122800729725 23.662429955101686 2 30.43797109393283 24.888551830813533 19.1350205426051 25.53845653264854 3 29.386538641050862 19.977641898491616 21.416828938500707 29.218990521956812 4 30.59668932309326 19.858604473261234 19.98048508433142 29.564221119314084 5 31.15750711717102 21.080613894629586 20.150608522188282 27.611270466011113 6 29.339065946744658 19.45418706192634 17.52594967787211 33.68079731345689 7 32.59043002699434 19.02867948029894 19.475948406372908 28.90494208633382 8 28.3119966269877 19.910687281300014 19.90875941649291 31.868556675219377 9 30.55007966163274 18.213030454706043 19.29346404034086 31.943425843320355 10-14 30.472703353781416 19.711321398105696 19.499062135840123 30.316913112272765 15-19 30.674029644541534 19.198902589285975 19.352743061390363 30.774324704782124 20-24 30.818974693687217 19.231246668065943 19.277492849553813 30.672285788693028 25-29 30.703122373306307 19.395651315968536 19.296387310537835 30.604839000187322 30-34 30.89334957544625 19.137830076402658 19.098817975895077 30.870002372256018 35-39 30.84561882388813 19.246490468401387 19.181551291545844 30.726339416164638 40-44 30.887358977921064 19.31982533595195 19.12039251836284 30.67242316776414 45-49 30.97514356603187 19.077577928521457 19.01137593796991 30.93590256747676 50-54 30.771618536317863 19.141349181221198 19.165721722112114 30.921310560348825 55-59 30.885596518655422 19.22011745930846 19.14185194399803 30.752434078038082 60-64 30.99816109429939 19.035799010976934 19.0008839027401 30.965155991983572 65-69 30.791410072082737 19.128092166299542 19.151677242951042 30.928820518666683 70-74 30.88895145611553 19.231942125882025 19.121716139359446 30.757390278642994 75-79 31.07016827242685 19.035044809127125 18.98295204560602 30.911834872840004 80-84 30.808594303076614 19.11250223621905 19.151707651137524 30.92719580956681 85-89 30.918121570740396 19.212658795444625 19.11364351820185 30.755576115613124 90-94 31.033965000000002 19.02461 18.970735 30.97069 95-99 30.851175350508562 19.113334669709122 19.12272731091983 30.912762668862488 100-101 31.00428524310509 19.324465944982748 19.12491970014051 30.54632911177165 >>END_MODULE >>Per base GC content warn #Base %GC 1 61.941477266896804 2 55.97642762658137 3 58.605529163007674 4 60.16091044240734 5 58.76877758318213 6 63.01986326020155 7 61.49537211332815 8 60.18055330220709 9 62.49350550495309 10-14 60.789616466054184 15-19 61.448354349323665 20-24 61.49126048238025 25-29 61.307961373493626 30-34 61.76335194770226 35-39 61.57195824005277 40-44 61.559782145685205 45-49 61.91104613350863 50-54 61.692929096666695 55-59 61.638030596693504 60-64 61.96331708628296 65-69 61.72023059074942 70-74 61.64634173475852 75-79 61.98200314526686 80-84 61.73579011264342 85-89 61.67369768635352 90-94 62.004655 95-99 61.76393801937105 100-101 61.55061435487674 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 100.0 1 80.0 2 47.5 3 38.0 4 36.0 5 30.0 6 35.0 7 41.5 8 42.5 9 57.5 10 75.0 11 96.5 12 128.5 13 151.0 14 187.5 15 227.5 16 262.0 17 300.0 18 353.0 19 389.5 20 423.5 21 501.0 22 595.0 23 716.5 24 807.5 25 897.5 26 1101.0 27 1302.5 28 1495.5 29 1768.5 30 2069.5 31 2406.0 32 2823.0 33 3319.0 34 3836.5 35 4414.5 36 5058.0 37 5712.5 38 6510.0 39 7465.0 40 8459.5 41 9696.5 42 11361.0 43 13511.5 44 16236.5 45 19805.5 46 24428.0 47 29812.0 48 36884.0 49 45624.0 50 55381.5 51 66896.0 52 79680.0 53 93280.0 54 107769.5 55 122190.5 56 135447.0 57 148296.5 58 160859.5 59 171584.0 60 181189.0 61 188972.0 62 194010.5 63 197361.5 64 198113.0 65 195743.0 66 190813.0 67 182821.0 68 171662.0 69 158023.5 70 141745.5 71 124163.0 72 106542.0 73 88734.5 74 71661.5 75 56472.5 76 43057.0 77 31620.5 78 22447.5 79 15199.0 80 9992.0 81 6331.0 82 3787.5 83 2283.0 84 1361.5 85 786.5 86 515.0 87 362.0 88 260.5 89 200.0 90 154.5 91 127.5 92 107.0 93 84.0 94 62.0 95 51.0 96 48.0 97 37.0 98 19.0 99 13.5 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.113175 2 0.11612499999999999 3 0.10332500000000001 4 0.127675 5 0.091975 6 0.10955 7 0.12719999999999998 8 0.14859999999999998 9 0.155825 10-14 0.08681 15-19 0.08481 20-24 0.067425 25-29 0.06448 30-34 0.0951 35-39 0.03723 40-44 0.051555000000000004 45-49 0.04077 50-54 0.051455 55-59 0.058155 60-64 3.1E-4 65-69 3.25E-4 70-74 8.950000000000001E-4 75-79 0.005305 80-84 0.026565 85-89 2.8E-4 90-94 0.0 95-99 0.02812 100-101 0.023175 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.20542501986775313 #Duplication Level Relative count 1 100.0 2 0.16728270777614168 3 0.00150253929140247 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 5.008464304674901E-4 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 323260 3.2516916 3.6426973 10-14 AAAAA 336275 3.2049613 3.9642167 1 >>END_MODULE