##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002006_Sedgewick_ACTGAT_L003_R2_005.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.60045125 34.0 31.0 34.0 31.0 34.0 2 32.7555805 34.0 31.0 34.0 31.0 34.0 3 32.7924875 34.0 31.0 34.0 31.0 34.0 4 36.16758025 37.0 37.0 37.0 35.0 37.0 5 36.165372 37.0 37.0 37.0 35.0 37.0 6 36.18188925 37.0 37.0 37.0 35.0 37.0 7 36.18793475 37.0 37.0 37.0 35.0 37.0 8 36.16628125 37.0 37.0 37.0 35.0 37.0 9 37.92279 39.0 39.0 39.0 37.0 39.0 10-14 38.202027 39.4 39.2 39.4 35.4 39.4 15-19 39.38168785 41.0 40.0 41.0 37.0 41.0 20-24 39.16553785 41.0 39.2 41.0 36.0 41.0 25-29 38.804568399999994 40.4 38.6 41.0 35.0 41.0 30-34 38.184286 40.0 37.4 41.0 34.2 41.0 35-39 37.23026635 39.0 35.4 41.0 33.0 41.0 40-44 36.31635970000001 37.2 35.0 40.0 32.0 41.0 45-49 35.342296399999995 35.2 35.0 39.0 31.2 41.0 50-54 33.96386305 35.0 33.6 36.2 29.4 39.2 55-59 33.9963369 35.0 35.0 35.0 31.0 38.2 60-64 33.628285749999996 35.0 34.6 35.0 31.0 36.4 65-69 33.31132055 35.0 34.0 35.0 30.0 35.2 70-74 33.0444291 35.0 34.0 35.0 29.6 35.0 75-79 32.800044150000005 35.0 33.4 35.0 29.0 35.0 80-84 32.5291668 35.0 33.0 35.0 28.2 35.0 85-89 32.2482675 35.0 33.0 35.0 27.0 35.0 90-94 31.88945745 35.0 33.0 35.0 26.6 35.0 95-99 31.331771300000003 35.0 33.0 35.0 24.2 35.0 100-101 30.245039 34.0 31.5 35.0 20.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 8246.0 3 1176.0 4 1530.0 5 1753.0 6 2319.0 7 2911.0 8 3461.0 9 4076.0 10 4318.0 11 4687.0 12 4675.0 13 4767.0 14 4843.0 15 4822.0 16 5301.0 17 5867.0 18 6652.0 19 7371.0 20 8546.0 21 10455.0 22 12440.0 23 15233.0 24 18056.0 25 22072.0 26 27385.0 27 33771.0 28 41115.0 29 51586.0 30 64754.0 31 82319.0 32 109852.0 33 155256.0 34 255170.0 35 613165.0 36 1418958.0 37 851180.0 38 119040.0 39 10792.0 40 80.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.284114051677555 24.44924401718727 13.569610270072422 23.69703166106276 2 30.492128040618994 24.88840322989949 19.12001697468352 25.49945175479799 3 29.372307228295437 19.991623114292636 21.45574942690729 29.18032023050464 4 30.59176942198194 19.879609210857215 19.918934597623643 29.609686769537202 5 31.095187457805867 21.113962672518422 20.109319595737936 27.68153027393777 6 29.335235123824532 19.46746529186469 17.507751781802327 33.68954780250845 7 32.59637782706165 19.05376294567291 19.457072012217907 28.892787215047527 8 28.355545741236465 19.854793143195923 19.909422847935137 31.88023826763248 9 30.528485649186532 18.210892940895718 19.273378245018677 31.98724316489907 10-14 30.433710335602697 19.67166236336218 19.546789547016253 30.34783775401887 15-19 30.666479310420925 19.193151128383516 19.364574086559486 30.775795474636077 20-24 30.593939936025393 19.250115519572443 19.35782873528667 30.798115809115494 25-29 30.7165988180525 19.377988396221234 19.290109175725124 30.615303610001142 30-34 30.881500066182628 19.143459167069725 19.09243473754772 30.882606029199927 35-39 30.706412452949515 19.205806341648664 19.238994756240498 30.84878644916132 40-44 30.847581915510382 19.280403254814424 19.165301624886517 30.706713204788677 45-49 30.98762511546908 19.038432011155052 19.012910030893448 30.961032842482417 50-54 30.7653089732443 19.134332567599333 19.17000890557831 30.93034955357806 55-59 30.881003487348817 19.23434281816318 19.157250211300667 30.727403483187327 60-64 30.98348809834881 19.031351903135192 18.99170189917019 30.993458099345812 65-69 30.77851461677719 19.13116786967518 19.16555287483293 30.9247646387147 70-74 30.9044 19.23781 19.100195 30.757595 75-79 30.990076251791365 19.04355725889563 18.996780853264642 30.969585636048365 80-84 30.804065043699598 19.117837010700182 19.159797622932068 30.91830032266816 85-89 30.897917724479427 19.21479980369995 19.124739781184946 30.762542690635676 90-94 31.028627402960694 19.030450206332883 18.979030111205706 30.96189227950072 95-99 30.856134714931606 19.10766428230062 19.138990150027155 30.89721085274062 100-101 31.017915924315982 19.346725564682394 19.075466499586717 30.559892011414906 >>END_MODULE >>Per base GC content warn #Base %GC 1 61.981145712740314 2 55.99157979541699 3 58.552627458800075 4 60.20145619151914 5 58.776717731743645 6 63.024782926332975 7 61.489165042109185 8 60.23578400886894 9 62.515728814085605 10-14 60.78154808962157 15-19 61.442274785056995 20-24 61.39205574514088 25-29 61.33190242805364 30-34 61.76410609538255 35-39 61.55519890211084 40-44 61.55429512029906 45-49 61.948657957951504 50-54 61.69565852682236 55-59 61.608406970536144 60-64 61.976946197694616 65-69 61.703279255491886 70-74 61.661995000000005 75-79 61.95966188783974 80-84 61.72236536636775 85-89 61.660460415115104 90-94 61.99051968246141 95-99 61.75334556767223 100-101 61.57780793573089 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 125.0 1 80.5 2 35.5 3 32.0 4 29.5 5 24.5 6 25.5 7 35.0 8 37.5 9 38.5 10 43.5 11 56.0 12 80.5 13 103.0 14 122.0 15 154.0 16 202.0 17 241.5 18 262.0 19 326.0 20 413.0 21 489.5 22 549.0 23 642.5 24 775.5 25 904.5 26 1068.5 27 1299.0 28 1495.0 29 1764.0 30 2162.0 31 2514.5 32 2840.5 33 3388.0 34 3989.5 35 4404.5 36 4962.0 37 5658.0 38 6442.0 39 7502.5 40 8569.0 41 9831.5 42 11436.5 43 13516.5 44 16421.0 45 19939.0 46 24555.0 47 30389.0 48 37171.5 49 45728.0 50 55991.5 51 67210.5 52 79790.5 53 93462.0 54 107875.5 55 121837.5 56 135739.5 57 148995.0 58 160711.0 59 171329.0 60 180625.0 61 188138.0 62 193303.5 63 196402.0 64 197388.0 65 195562.0 66 190390.0 67 182891.5 68 172254.5 69 158218.5 70 142022.0 71 124892.5 72 107201.0 73 89020.0 74 72003.0 75 56504.5 76 42735.5 77 31501.0 78 22460.5 79 15244.5 80 9810.0 81 6128.5 82 3711.0 83 2168.5 84 1236.0 85 715.0 86 455.0 87 298.5 88 228.0 89 176.5 90 123.0 91 96.0 92 92.0 93 67.5 94 50.5 95 42.0 96 29.0 97 23.5 98 16.0 99 10.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.21102500000000002 2 0.20432499999999998 3 0.201575 4 0.1917 5 0.20087500000000003 6 0.111675 7 0.113825 8 0.1459 9 0.163325 10-14 0.090345 15-19 0.083395 20-24 0.049405 25-29 0.04463 30-34 0.087075 35-39 0.05548499999999999 40-44 0.02748 45-49 0.02735 50-54 0.045795 55-59 0.035809999999999995 60-64 9.999999999999999E-6 65-69 1.4999999999999999E-5 70-74 0.0 75-79 0.003005 80-84 0.013375 85-89 2.4999999999999998E-5 90-94 1.85E-4 95-99 0.00277 100-101 0.007949999999999999 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.21441316266912036 #Duplication Level Relative count 1 100.0 2 0.1717989301384409 3 0.002504357582193016 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 335595 3.1998694 4.0294843 1 TTTTT 317495 3.1810677 3.7862315 10-14 >>END_MODULE