##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002006_Sedgewick_ACTGAT_L003_R2_004.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.5716065 34.0 31.0 34.0 31.0 34.0 2 32.714892 34.0 31.0 34.0 31.0 34.0 3 32.7738565 34.0 31.0 34.0 31.0 34.0 4 36.1789785 37.0 37.0 37.0 35.0 37.0 5 36.18702925 37.0 37.0 37.0 35.0 37.0 6 36.18986675 37.0 37.0 37.0 35.0 37.0 7 36.17795975 37.0 37.0 37.0 35.0 37.0 8 36.146968 37.0 37.0 37.0 35.0 37.0 9 37.9073665 39.0 39.0 39.0 35.0 39.0 10-14 38.18970975 39.4 38.6 39.4 35.4 39.4 15-19 39.360326199999996 41.0 40.0 41.0 36.6 41.0 20-24 39.1834008 41.0 39.0 41.0 36.0 41.0 25-29 38.8125435 40.4 38.6 41.0 35.0 41.0 30-34 38.2015976 40.0 37.4 41.0 34.2 41.0 35-39 37.281566 39.0 35.2 41.0 33.0 41.0 40-44 36.39180220000001 37.2 35.0 40.0 32.2 41.0 45-49 35.4217902 35.2 35.0 39.0 31.4 41.0 50-54 34.036853050000005 34.8 33.6 36.2 29.6 39.2 55-59 34.1292955 35.0 35.0 35.0 31.0 38.2 60-64 33.7194709 35.0 34.8 35.0 31.0 36.4 65-69 33.39526355 35.0 34.0 35.0 30.2 35.0 70-74 33.1678051 35.0 34.0 35.0 30.0 35.0 75-79 32.97078595 35.0 34.0 35.0 29.2 35.0 80-84 32.72377655 35.0 33.0 35.0 29.0 35.0 85-89 32.45961045 35.0 33.0 35.0 28.2 35.0 90-94 32.1391386 35.0 33.0 35.0 27.0 35.0 95-99 31.675983300000002 35.0 33.0 35.0 25.8 35.0 100-101 30.624353625 34.0 31.5 35.0 22.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 6118.0 3 954.0 4 1140.0 5 1431.0 6 1816.0 7 2387.0 8 2853.0 9 3394.0 10 3828.0 11 3935.0 12 4043.0 13 4168.0 14 4266.0 15 4432.0 16 4733.0 17 5353.0 18 5862.0 19 6716.0 20 7903.0 21 9484.0 22 11640.0 23 14178.0 24 17634.0 25 21826.0 26 26484.0 27 32971.0 28 40965.0 29 50318.0 30 63945.0 31 82262.0 32 109037.0 33 153521.0 34 250030.0 35 612950.0 36 1447760.0 37 852148.0 38 116753.0 39 10675.0 40 87.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.32588943864492 24.40457183925592 13.558415221179764 23.711123500919392 2 30.497431985914208 24.861939839102483 19.09396799466678 25.54666018031653 3 29.406491967995102 19.971482466321234 21.41497615948198 29.207049406201683 4 30.628418841806116 19.843707229291283 19.910864279205185 29.61700964969742 5 31.109398882771007 21.062393211570548 20.122730081378098 27.705477824280344 6 29.38384889477501 19.425211933016303 17.49417769188841 33.696761480320276 7 32.60930565182141 18.984043356054162 19.497758830822328 28.908892161302102 8 28.326713848183292 19.858380328297418 19.855100008438686 31.959805815080607 9 30.53561666374084 18.206974754161664 19.232575197718706 32.02483338437879 10-14 30.442846115212046 19.644663561507194 19.518907506030775 30.393582817249982 15-19 30.686762904044524 19.153135897124464 19.352905200062313 30.807195998768695 20-24 30.602902015890265 19.2031773329862 19.346434075283355 30.847486575840172 25-29 30.735970369712206 19.34445209562684 19.282520543624848 30.63705699103611 30-34 30.89956152332798 19.100746244568583 19.080278428357964 30.91941380374547 35-39 30.727362035724763 19.175929591101188 19.2117762281313 30.884932145042747 40-44 30.85717630156694 19.239684610505382 19.150182186356332 30.752956901571345 45-49 31.004294319330178 19.019694167796565 19.001502731666463 30.97450878120679 50-54 30.79366313342302 19.10544422079441 19.154229677045482 30.946662968737087 55-59 30.902046593923917 19.19540049347313 19.130162317104755 30.772390595498194 60-64 31.012096643547913 19.01606845784645 18.964948273813786 31.006886624791854 65-69 30.80274 19.08334 19.14544 30.96848 70-74 30.927375 19.208765 19.0885 30.775360000000003 75-79 31.03193265881133 18.999023145720805 18.966794705334795 31.00224949013307 80-84 30.80611640603035 19.091364720244997 19.147555064887445 30.954963808837206 85-89 30.92932132596528 19.179881415023516 19.089279140906438 30.801518118104767 90-94 31.043851125355914 19.03233961369425 18.94175873505973 30.982050525890102 95-99 30.83152321358246 19.0833038488226 19.12919716698652 30.955975770608426 100-101 31.006090056017317 19.31356506125874 19.093993994331885 30.58635088839206 >>END_MODULE >>Per base GC content warn #Base %GC 1 62.03701293956432 2 56.04409216623074 3 58.613541374196785 4 60.245428491503525 5 58.814876707051354 6 63.08061037509529 7 61.51819781312351 8 60.286519663263896 9 62.560450048119634 10-14 60.83642893246203 15-19 61.49395890281322 20-24 61.450388591730444 25-29 61.37302736074831 30-34 61.81897532707345 35-39 61.61229418076751 40-44 61.61013320313828 45-49 61.97880310053697 50-54 61.740326102160104 55-59 61.674437189422115 60-64 62.01898326833977 65-69 61.77122000000001 70-74 61.702735 75-79 62.034182148944396 80-84 61.76108021486756 85-89 61.73083944407005 90-94 62.025901651246016 95-99 61.78749898419088 100-101 61.592440944409375 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 9.0 1 7.5 2 6.0 3 6.5 4 7.5 5 7.5 6 13.5 7 17.0 8 16.0 9 26.5 10 43.0 11 61.0 12 84.5 13 122.5 14 147.0 15 175.5 16 208.0 17 232.5 18 281.0 19 338.0 20 404.0 21 453.0 22 533.0 23 634.5 24 717.0 25 825.0 26 1032.0 27 1234.0 28 1437.5 29 1704.5 30 2033.0 31 2439.0 32 2844.0 33 3326.5 34 3817.5 35 4343.0 36 4948.5 37 5588.5 38 6251.5 39 7097.5 40 8146.0 41 9533.5 42 11435.0 43 13478.5 44 16138.5 45 19861.5 46 24140.0 47 29733.5 48 36965.5 49 45182.0 50 55205.0 51 66821.0 52 79314.5 53 92668.5 54 106626.0 55 121080.0 56 135291.5 57 148549.0 58 160890.0 59 171726.0 60 180699.0 61 188196.5 62 193919.5 63 197045.5 64 198165.5 65 196497.0 66 191490.5 67 183603.5 68 172696.5 69 158871.0 70 142659.0 71 125305.5 72 107450.0 73 89874.5 74 72730.0 75 57060.5 76 43533.5 77 31942.0 78 22444.5 79 15116.5 80 9884.5 81 6124.0 82 3545.5 83 1985.5 84 1094.5 85 621.0 86 357.5 87 220.0 88 150.0 89 112.5 90 90.5 91 68.5 92 46.0 93 37.0 94 32.5 95 22.0 96 19.5 97 15.5 98 6.5 99 6.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.09709999999999999 2 0.0979 3 0.09655 4 0.08495 5 0.06525 6 0.10405 7 0.12467500000000001 8 0.16217499999999999 9 0.170675 10-14 0.10819 15-19 0.089755 20-24 0.05706 25-29 0.05902 30-34 0.08704500000000001 35-39 0.060360000000000004 40-44 0.0474 45-49 0.035379999999999995 50-54 0.05218 55-59 0.04319 60-64 3.5999999999999997E-4 65-69 0.0 70-74 0.0 75-79 0.010675 80-84 0.01841 85-89 0.00251 90-94 9.7E-4 95-99 0.018125 100-101 0.015287499999999999 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.2722617709504091 #Duplication Level Relative count 1 100.0 2 0.17732805690527476 3 0.0035064870009517608 4 0.0015027801432650402 5 0.0 6 0.0 7 0.0 8 5.009267144216801E-4 9 0.0 10++ 0.0025046335721084006 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 304190 3.0668755 3.7253473 9 >>END_MODULE