##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002006_Sedgewick_ACTGAT_L003_R2_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.6295255 34.0 31.0 34.0 31.0 34.0 2 32.77595125 34.0 31.0 34.0 31.0 34.0 3 32.823132 34.0 31.0 34.0 31.0 34.0 4 36.19823225 37.0 37.0 37.0 35.0 37.0 5 36.206161 37.0 37.0 37.0 35.0 37.0 6 36.207219 37.0 37.0 37.0 35.0 37.0 7 36.21108025 37.0 37.0 37.0 35.0 37.0 8 36.19379375 37.0 37.0 37.0 35.0 37.0 9 37.97233125 39.0 39.0 39.0 37.0 39.0 10-14 38.2531803 39.4 39.2 39.4 37.0 39.4 15-19 39.447444250000004 41.0 40.0 41.0 37.0 41.0 20-24 39.258820199999995 41.0 39.4 41.0 36.2 41.0 25-29 38.8960747 40.6 38.6 41.0 35.0 41.0 30-34 38.284433650000004 40.0 37.6 41.0 34.4 41.0 35-39 37.36479545 39.2 35.4 41.0 33.0 41.0 40-44 36.4245157 37.4 35.0 40.0 32.6 41.0 45-49 35.44472535 35.2 35.0 39.0 31.4 41.0 50-54 34.035222000000005 34.8 33.6 36.2 29.6 39.4 55-59 34.14705105 35.0 35.0 35.2 31.0 38.2 60-64 33.753723349999994 35.0 35.0 35.0 31.0 36.4 65-69 33.4217996 35.0 34.0 35.0 30.6 35.2 70-74 33.1734305 35.0 34.0 35.0 30.0 35.0 75-79 32.928925299999996 35.0 34.0 35.0 29.2 35.0 80-84 32.6458351 35.0 33.0 35.0 29.0 35.0 85-89 32.36721899999999 35.0 33.0 35.0 27.4 35.0 90-94 32.02510575 35.0 33.0 35.0 27.0 35.0 95-99 31.508979850000003 35.0 33.0 35.0 24.6 35.0 100-101 30.495862250000002 34.0 31.5 35.0 21.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 6577.0 3 1000.0 4 1247.0 5 1521.0 6 1922.0 7 2411.0 8 2866.0 9 3318.0 10 3652.0 11 4049.0 12 4083.0 13 4250.0 14 4297.0 15 4427.0 16 4873.0 17 5120.0 18 6082.0 19 6851.0 20 8160.0 21 9590.0 22 11484.0 23 14104.0 24 17315.0 25 21232.0 26 26441.0 27 32035.0 28 40182.0 29 50506.0 30 64001.0 31 81628.0 32 109226.0 33 154929.0 34 252387.0 35 602988.0 36 1427494.0 37 873199.0 38 123223.0 39 11234.0 40 96.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.256629905669264 24.480725026002577 13.592333698738852 23.67031136958931 2 30.4373698453108 24.895682151448405 19.14559668607221 25.521351317168584 3 29.33379414147561 19.952967516782557 21.459058824413315 29.254179517328517 4 30.617366060730205 19.91597204710834 19.921130516024686 29.545531376136775 5 31.084996691732037 21.105898133395577 20.12536357138671 27.68374160348568 6 29.325872491111515 19.457058215652793 17.551133035911253 33.66593625732443 7 32.54406364779736 19.018631225748024 19.480667792978366 28.956637333476248 8 28.35727868847533 19.824244916234246 19.906580811629595 31.911895583660833 9 30.532112719931526 18.182041277086554 19.26172221078669 32.024123792195226 10-14 30.44310777695175 19.656731772886676 19.53476461886203 30.365395831299548 15-19 30.658106645883155 19.184415608332607 19.39106636575012 30.766411380034114 20-24 30.560526594780512 19.226357036172274 19.37707671073585 30.83603965831137 25-29 30.7157407333296 19.36471981878867 19.296955665655492 30.622583782226243 30-34 30.88626295423654 19.131167838061284 19.123846204661422 30.858723003040755 35-39 30.712133808905683 19.185551162867252 19.23134803189031 30.87096699633675 40-44 30.84473465915176 19.26503711190768 19.166227761330674 30.724000467609887 45-49 30.971223239294204 19.059841470690056 19.024297500132427 30.944637789883313 50-54 30.779529548367773 19.110372551207668 19.173595750960814 30.936502149463745 55-59 30.891509256487065 19.211308356375152 19.136584217781614 30.760598169356168 60-64 30.980306333260383 19.037401181791004 18.992236143400724 30.990056341547888 65-69 30.792370000000002 19.126855000000003 19.165875 30.9149 70-74 30.898088538853123 19.21778153066892 19.11868147120888 30.765448459269074 75-79 30.985685256870692 19.042372767784368 19.008884157712203 30.963057817632738 80-84 30.80502197447663 19.132070562983404 19.132980779478398 30.929926683061566 85-89 30.903910991453138 19.224266720040088 19.100511515844 30.771310772662773 90-94 31.004401637854084 19.02973865575244 18.98375826032104 30.982101446072434 95-99 30.822572588428066 19.111030944729084 19.146300707910605 30.92009575893224 100-101 31.007871419194295 19.345735546866063 19.075337940755535 30.571055093184107 >>END_MODULE >>Per base GC content warn #Base %GC 1 61.92694127525857 2 55.958721162479385 3 58.587973658804124 4 60.16289743686698 5 58.768738295217716 6 62.99180874843595 7 61.5007009812736 8 60.26917427213616 9 62.55623651212675 10-14 60.8085036082513 15-19 61.42451802591727 20-24 61.396566253091876 25-29 61.33832451555584 30-34 61.7449859572773 35-39 61.58310080524244 40-44 61.568735126761645 45-49 61.91586102917752 50-54 61.71603169783152 55-59 61.65210742584324 60-64 61.97036267480828 65-69 61.70727 70-74 61.663536998122204 75-79 61.94874307450343 80-84 61.73494865753819 85-89 61.6752217641159 90-94 61.98650308392652 95-99 61.74266834736031 100-101 61.578926512378395 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 6.0 1 6.0 2 4.5 3 4.0 4 6.5 5 7.0 6 7.5 7 9.0 8 16.0 9 25.0 10 31.5 11 56.0 12 74.5 13 95.5 14 137.5 15 173.0 16 205.0 17 241.5 18 292.0 19 340.0 20 399.0 21 466.5 22 522.5 23 622.5 24 752.0 25 899.5 26 1053.0 27 1250.5 28 1513.0 29 1750.0 30 2027.0 31 2423.5 32 2833.5 33 3304.0 34 3828.5 35 4326.5 36 4953.0 37 5692.5 38 6504.0 39 7441.5 40 8517.5 41 9896.5 42 11600.0 43 13708.0 44 16476.5 45 19953.0 46 24309.5 47 30176.0 48 37427.0 49 45813.5 50 55638.0 51 67032.5 52 79685.0 53 93454.5 54 108082.5 55 122197.5 56 135603.0 57 148967.0 58 161247.5 59 172132.5 60 181459.0 61 188421.0 62 193799.0 63 197224.0 64 198043.0 65 195870.0 66 190639.0 67 182660.5 68 171619.5 69 157538.5 70 141514.0 71 124619.5 72 106835.0 73 88816.5 74 71601.5 75 56232.0 76 42757.5 77 31434.5 78 22249.0 79 15020.0 80 9908.5 81 6173.5 82 3651.5 83 2148.0 84 1224.5 85 690.0 86 414.5 87 271.5 88 220.5 89 175.5 90 131.0 91 104.0 92 78.0 93 62.5 94 51.5 95 36.0 96 32.0 97 23.5 98 17.0 99 12.5 100 4.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.2022 2 0.178875 3 0.175375 4 0.164175 5 0.17435 6 0.15872499999999998 7 0.17565 8 0.16505 9 0.16494999999999999 10-14 0.12474999999999999 15-19 0.08746999999999999 20-24 0.062815 25-29 0.0504 30-34 0.0906 35-39 0.05867 40-44 0.044885 45-49 0.039305 50-54 0.036695 55-59 0.06576 60-64 8.5E-5 65-69 0.0 70-74 5.9999999999999995E-5 75-79 0.01078 80-84 0.023785 85-89 1.65E-4 90-94 8.600000000000001E-4 95-99 0.013505 100-101 0.0037375 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.2917592985786847 #Duplication Level Relative count 1 100.0 2 0.19591043235578537 3 0.004008397592957245 4 0.0020041987964786226 5 0.0020041987964786226 6 0.0010020993982393113 7 0.001503149097358967 8 0.0 9 5.010496991196557E-4 10++ 0.003006298194717934 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 310060 3.109338 3.7707741 10-14 >>END_MODULE