##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002006_Sedgewick_ACTGAT_L003_R1_006.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.767123 34.0 31.0 34.0 31.0 34.0 2 32.9962315 34.0 31.0 34.0 31.0 34.0 3 33.0460385 34.0 31.0 34.0 31.0 34.0 4 36.4554715 37.0 37.0 37.0 35.0 37.0 5 36.38655275 37.0 37.0 37.0 35.0 37.0 6 36.3663995 37.0 37.0 37.0 35.0 37.0 7 36.35316175 37.0 37.0 37.0 35.0 37.0 8 36.347616 37.0 37.0 37.0 35.0 37.0 9 38.14419925 39.0 39.0 39.0 37.0 39.0 10-14 38.363815450000004 39.4 38.6 39.4 36.2 39.4 15-19 39.55960854999999 41.0 40.0 41.0 37.0 41.0 20-24 39.1004021 40.6 38.8 41.0 35.8 41.0 25-29 31.196172900000004 30.2 25.8 40.4 21.0 41.0 30-34 35.02560965 38.2 34.0 40.0 23.8 41.0 35-39 36.075532550000005 38.0 34.8 40.0 29.4 41.0 40-44 34.7629304 36.4 34.0 39.4 26.6 41.0 45-49 34.07391925 35.0 33.6 38.4 26.4 40.8 50-54 33.393351100000004 35.0 33.6 36.2 26.0 39.6 55-59 33.163592699999995 35.0 33.4 35.0 27.4 37.6 60-64 32.9805619 35.0 33.0 35.0 28.0 36.0 65-69 32.68046785 35.0 33.0 35.0 28.0 35.0 70-74 31.942721549999998 35.0 33.0 35.0 25.0 35.0 75-79 31.71934755 34.4 32.4 35.0 25.8 35.0 80-84 31.558325099999998 35.0 32.8 35.0 24.0 35.0 85-89 31.64069685 35.0 33.0 35.0 24.6 35.0 90-94 31.363114250000002 35.0 33.0 35.0 24.0 35.0 95-99 30.792931900000003 35.0 32.0 35.0 22.2 35.0 100-101 29.411088499999998 34.0 30.0 35.0 9.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 19.0 3 17.0 4 43.0 5 121.0 6 460.0 7 1480.0 8 4344.0 9 6254.0 10 6256.0 11 6786.0 12 6058.0 13 6564.0 14 6931.0 15 7388.0 16 7860.0 17 8832.0 18 9621.0 19 10625.0 20 11364.0 21 13158.0 22 15463.0 23 19270.0 24 24292.0 25 30580.0 26 38339.0 27 48830.0 28 61902.0 29 80318.0 30 106063.0 31 150540.0 32 229335.0 33 367393.0 34 594993.0 35 860575.0 36 873033.0 37 340885.0 38 41371.0 39 2629.0 40 8.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.45129606166455 24.684172157549416 13.765198886789982 23.099332893996046 2 30.12546600372803 24.708097664781317 19.938784510276083 25.227651821214568 3 28.9588 20.072725 22.23855 28.729925 4 30.308149271858316 20.295466698933517 20.60769349423759 28.788690534970574 5 31.045025 21.09985 20.322325 27.5328 6 29.315625 19.524175 17.78595 33.374249999999996 7 32.42235 19.20315 19.653025 28.721475 8 28.31615 19.871175 20.005899999999997 31.806775 9 30.475550000000002 18.240225 19.413800000000002 31.870425 10-14 30.48787 19.663175 19.600875000000002 30.248079999999998 15-19 30.6504 19.203400000000002 19.41176 30.734440000000003 20-24 30.73781912065115 19.165386854842964 19.31823926226838 30.778554762237505 25-29 35.42832136308927 18.25232625683941 17.95827387792188 28.36107850214945 30-34 32.10433996430416 19.117542859922168 18.73696108225194 30.041156093521725 35-39 31.11654702036777 19.15729046509584 19.13919985067366 30.58696266386273 40-44 31.282919726307284 19.33121681713839 18.997503752271903 30.388359704282426 45-49 31.47222 19.264215 18.892565 30.371 50-54 31.266247545493126 19.320959098685474 19.021618260531127 30.39117509529027 55-59 30.988788944955026 19.2623486680569 19.119233603655122 30.62962878333295 60-64 31.010414288695397 18.99856406382143 18.97436502790142 31.016656619581752 65-69 30.871738823243998 19.172506762139026 19.11906991982973 30.836684494787242 70-74 31.110539999999997 19.326755000000002 19.076165 30.48654 75-79 31.162785 19.04592 18.945629999999998 30.845665 80-84 30.986770526774333 19.175998410737144 19.12191127159079 30.715319790897734 85-89 30.9737223193447 19.20167326719403 19.11309777082417 30.711506642637104 90-94 31.08292532595772 18.98572197231345 18.970808326127074 30.960544375601756 95-99 30.947131310454484 19.02964816708376 19.117325139815648 30.905895382646108 100-101 31.19935 19.1979875 19.028824999999998 30.5738375 >>END_MODULE >>Per base GC content warn #Base %GC 1 61.5506289556606 2 55.3531178249426 3 57.688725 4 59.096839806828896 5 58.577825 6 62.689874999999994 7 61.14382499999999 8 60.122925 9 62.345974999999996 10-14 60.73595 15-19 61.38484 20-24 61.51637388288865 25-29 63.789399865238714 30-34 62.14549605782589 35-39 61.703509684230504 40-44 61.671279430589706 45-49 61.84322 50-54 61.6574226407834 55-59 61.61841772828798 60-64 62.027070908277146 65-69 61.708423318031244 70-74 61.597080000000005 75-79 62.00845 80-84 61.70209031767207 85-89 61.6852289619818 90-94 62.04346970155948 95-99 61.8530266931006 100-101 61.773187500000006 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4.0 1 5.0 2 4.5 3 3.0 4 3.5 5 4.0 6 4.0 7 5.0 8 6.5 9 9.5 10 14.0 11 21.5 12 29.5 13 36.5 14 53.0 15 73.0 16 91.5 17 128.5 18 155.5 19 179.0 20 239.5 21 305.5 22 370.0 23 478.5 24 590.5 25 695.0 26 870.5 27 1056.0 28 1269.5 29 1554.5 30 1866.5 31 2224.5 32 2627.5 33 3132.0 34 3657.5 35 4255.0 36 4862.0 37 5537.5 38 6377.5 39 7244.0 40 8261.5 41 9581.0 42 11217.5 43 13225.0 44 16049.5 45 19707.5 46 24064.0 47 29650.0 48 36493.0 49 45014.0 50 55167.0 51 67013.0 52 80020.0 53 93448.5 54 107860.5 55 122508.5 56 136814.0 57 150209.5 58 162599.5 59 173773.0 60 183355.5 61 190880.0 62 196198.5 63 199311.5 64 199566.5 65 196972.5 66 191385.0 67 182776.5 68 171403.0 69 157318.0 70 140974.5 71 123390.5 72 105391.0 73 87399.0 74 70410.5 75 55225.5 76 41759.0 77 30557.0 78 21658.0 79 14772.5 80 9795.0 81 6302.5 82 3873.0 83 2312.0 84 1476.5 85 922.5 86 558.5 87 392.5 88 277.0 89 206.5 90 155.5 91 110.5 92 77.5 93 49.0 94 29.5 95 16.0 96 12.0 97 7.5 98 2.0 99 0.5 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 9.0E-4 2 7.999999999999999E-4 3 0.0 4 5.75E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.001575 25-29 3.362455 30-34 0.07798 35-39 0.031034999999999997 40-44 0.003915 45-49 0.0 50-54 2.8E-4 55-59 4.4999999999999996E-5 60-64 0.037340000000000005 65-69 0.040875 70-74 0.0 75-79 0.0 80-84 0.003955 85-89 0.023139999999999997 90-94 0.057975 95-99 0.0022500000000000003 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.06299622022678378 #Duplication Level Relative count 1 100.0 2 0.05653222336731937 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 5.002851625426493E-4 10++ 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 316680 3.267185 4.1094856 95-97 AAAAA 315265 3.0592992 3.8247683 1 >>END_MODULE