##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002006_Sedgewick_ACTGAT_L003_R1_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.83638775 34.0 31.0 34.0 31.0 34.0 2 33.0564775 34.0 31.0 34.0 31.0 34.0 3 33.103822 34.0 33.0 34.0 31.0 34.0 4 36.46780025 37.0 37.0 37.0 35.0 37.0 5 36.407428 37.0 37.0 37.0 35.0 37.0 6 36.38380775 37.0 37.0 37.0 35.0 37.0 7 36.373584 37.0 37.0 37.0 35.0 37.0 8 36.3530385 37.0 37.0 37.0 35.0 37.0 9 38.1541195 39.0 39.0 39.0 37.0 39.0 10-14 38.431516849999994 39.4 39.0 39.4 37.0 39.4 15-19 39.58422185 41.0 40.0 41.0 37.0 41.0 20-24 39.3771316 41.0 39.2 41.0 36.2 41.0 25-29 38.9744163 40.0 38.6 41.0 35.2 41.0 30-34 38.28088290000001 40.0 37.4 41.0 34.2 41.0 35-39 37.33877845 39.0 35.4 40.8 33.0 41.0 40-44 36.38858225 37.2 35.0 40.0 32.2 41.0 45-49 35.7593054 35.2 35.0 39.2 32.6 41.0 50-54 34.83031845000001 35.0 35.0 36.8 31.6 40.0 55-59 34.122821900000005 35.0 34.4 35.2 31.0 38.2 60-64 33.57444174999999 35.0 34.0 35.0 30.4 36.4 65-69 33.18097125 35.0 33.4 35.0 29.6 35.0 70-74 32.90307725 35.0 33.0 35.0 29.0 35.0 75-79 32.2851231 34.4 32.6 35.0 27.8 35.0 80-84 32.564813349999994 35.0 33.0 35.0 29.0 35.0 85-89 32.2731506 35.0 33.0 35.0 27.4 35.0 90-94 31.8998847 35.0 33.0 35.0 26.8 35.0 95-99 31.323188700000003 35.0 33.0 35.0 24.2 35.0 100-101 30.182631999999998 34.0 31.0 35.0 20.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 37.0 3 11.0 4 34.0 5 72.0 6 243.0 7 671.0 8 1617.0 9 2618.0 10 3382.0 11 4015.0 12 4217.0 13 4382.0 14 4782.0 15 5254.0 16 5778.0 17 6517.0 18 7160.0 19 7897.0 20 8490.0 21 9577.0 22 11275.0 23 13619.0 24 17256.0 25 21806.0 26 27264.0 27 34667.0 28 43827.0 29 54720.0 30 69687.0 31 89994.0 32 118863.0 33 165690.0 34 267067.0 35 634125.0 36 1423861.0 37 810010.0 38 111050.0 39 8438.0 40 27.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.463758106826454 24.678583725510737 13.744466779171011 23.113191388491803 2 30.118624999999998 24.64645 19.931375000000003 25.30355 3 28.969575 20.077 22.186374999999998 28.76705 4 30.294300000000003 20.253525 20.600675 28.8515 5 31.026825000000002 21.075825000000002 20.331825000000002 27.565525 6 29.30805 19.564024999999997 17.789375 33.33855 7 32.460675 19.215075000000002 19.626475 28.697774999999996 8 28.330525 19.8476 20.04325 31.778624999999998 9 30.5266 18.253825000000003 19.4023 31.817275000000002 10-14 30.39709 19.666439999999998 19.618425000000002 30.318044999999998 15-19 30.644945 19.21054 19.40488 30.739635 20-24 30.572419986993797 19.24512214841773 19.397849546237875 30.7846083183506 25-29 30.718183491375267 19.390419763417356 19.331389353156002 30.560007392051375 30-34 30.904071928983413 19.142220511485323 19.136948240454576 30.81675931907669 35-39 30.722917592794925 19.18669895635242 19.274902203356014 30.81548124749664 40-44 30.85754800496306 19.265491002264778 19.207445291204817 30.669515701567345 45-49 30.974819999999998 19.045025 19.04656 30.933595000000004 50-54 30.791518151585805 19.11714904244929 19.195119303649665 30.896213502315234 55-59 30.878805 19.22153 19.17862 30.721045000000004 60-64 30.99879913062879 19.01873803337998 19.02192388065606 30.96053895533517 65-69 30.8054748071102 19.113483344148417 19.174217844510377 30.90682400423101 70-74 30.92219 19.208955 19.136765 30.73209 75-79 31.036355 19.019295 18.998925 30.945425 80-84 30.838710864550617 19.101809907577817 19.150156312040863 30.909322915830707 85-89 30.931659381526945 19.20675360557905 19.13795969545042 30.723627317443587 90-94 31.057697121883777 19.00247652012535 18.979948604942347 30.95987775304853 95-99 30.92535021308709 19.051237909280324 19.120248443925203 30.90316343370738 100-101 31.133594119339726 19.267934996333715 19.064595412102975 30.533875472223592 >>END_MODULE >>Per base GC content warn #Base %GC 1 61.57694949531825 2 55.422174999999996 3 57.736625 4 59.1458 5 58.59235 6 62.6466 7 61.158449999999995 8 60.10915 9 62.343875000000004 10-14 60.715135 15-19 61.38458 20-24 61.3570283053444 25-29 61.27819088342664 30-34 61.7208312480601 35-39 61.53839884029156 40-44 61.527063706530406 45-49 61.908415000000005 50-54 61.68773165390105 55-59 61.59985 60-64 61.959338085963964 65-69 61.712298811341206 70-74 61.65427999999999 75-79 61.98178 80-84 61.74803378038132 85-89 61.655286698970535 90-94 62.0175748749323 95-99 61.82851364679447 100-101 61.66746959156332 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 6.0 1 4.0 2 1.5 3 2.5 4 4.0 5 3.0 6 4.5 7 8.0 8 10.0 9 11.0 10 15.0 11 23.5 12 32.0 13 46.0 14 60.0 15 77.0 16 105.5 17 128.0 18 156.5 19 205.5 20 255.0 21 323.5 22 405.0 23 497.0 24 640.0 25 774.5 26 925.5 27 1147.5 28 1417.5 29 1662.0 30 1973.5 31 2357.0 32 2788.0 33 3299.5 34 3807.5 35 4346.5 36 4932.0 37 5725.5 38 6580.0 39 7443.0 40 8535.0 41 9778.5 42 11563.5 43 13963.5 44 16694.0 45 20204.0 46 24946.0 47 30755.0 48 37783.5 49 46483.0 50 56461.5 51 67874.5 52 80752.5 53 94438.5 54 108799.0 55 123039.5 56 137038.0 57 150232.0 58 162099.0 59 172771.0 60 181649.5 61 188664.0 62 193997.0 63 197155.5 64 197323.0 65 194773.5 66 189837.0 67 181937.0 68 170546.0 69 157095.0 70 141177.5 71 123136.0 72 105424.5 73 88027.0 74 71118.5 75 55907.0 76 42409.5 77 31012.0 78 22102.5 79 15017.5 80 9813.5 81 6215.0 82 3737.5 83 2118.5 84 1235.0 85 746.5 86 448.0 87 308.0 88 216.0 89 148.0 90 100.0 91 67.5 92 48.0 93 29.5 94 18.0 95 12.5 96 9.0 97 4.5 98 1.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.018675 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.0015699999999999998 25-29 6.950000000000001E-4 30-34 0.043074999999999995 35-39 0.009349999999999999 40-44 0.001225 45-49 0.0 50-54 3.35E-4 55-59 0.0 60-64 0.026594999999999997 65-69 0.023875 70-74 0.0 75-79 0.0 80-84 0.002905 85-89 0.020220000000000002 90-94 0.035135 95-99 0.00802 100-101 0.001025 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.18047563578917178 #Duplication Level Relative count 1 100.0 2 0.1652760109382669 3 0.002003345587130508 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 306635 3.031426 3.5915358 10-14 >>END_MODULE