##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002006_Sedgewick_ACTGAT_L002_R2_007.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.60223725 34.0 31.0 34.0 31.0 34.0 2 32.775428 34.0 31.0 34.0 31.0 34.0 3 32.829846 34.0 31.0 34.0 31.0 34.0 4 36.17083325 37.0 37.0 37.0 35.0 37.0 5 36.195739 37.0 37.0 37.0 35.0 37.0 6 36.20577175 37.0 37.0 37.0 35.0 37.0 7 36.1917795 37.0 37.0 37.0 35.0 37.0 8 36.14800675 37.0 37.0 37.0 35.0 37.0 9 37.905144 39.0 39.0 39.0 35.0 39.0 10-14 38.181574749999996 39.4 38.8 39.4 35.4 39.4 15-19 39.2930875 41.0 40.0 41.0 36.2 41.0 20-24 39.1212463 41.0 39.0 41.0 35.8 41.0 25-29 38.7097075 40.2 38.4 41.0 35.0 41.0 30-34 38.142188350000005 40.0 37.4 41.0 34.0 41.0 35-39 37.1466172 39.0 35.2 40.8 32.6 41.0 40-44 36.23020269999999 37.0 35.0 40.0 32.0 41.0 45-49 35.25243135 35.2 35.0 39.0 31.0 41.0 50-54 33.9002262 34.8 33.4 36.2 29.0 39.2 55-59 34.013175950000004 35.0 35.0 35.0 31.0 38.2 60-64 33.60103975 35.0 34.4 35.0 30.6 36.4 65-69 33.286309700000004 35.0 34.0 35.0 30.0 35.0 70-74 33.02357725 35.0 34.0 35.0 29.4 35.0 75-79 32.75288825 35.0 33.4 35.0 29.0 35.0 80-84 32.4811646 35.0 33.0 35.0 27.8 35.0 85-89 32.18442065000001 35.0 33.0 35.0 27.0 35.0 90-94 31.795135200000004 35.0 33.0 35.0 25.8 35.0 95-99 31.256844949999998 35.0 33.0 35.0 24.0 35.0 100-101 30.180515999999997 34.0 31.5 35.0 20.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 6802.0 3 1190.0 4 1617.0 5 1882.0 6 2396.0 7 2975.0 8 3716.0 9 4206.0 10 4344.0 11 4773.0 12 4885.0 13 4858.0 14 4941.0 15 5111.0 16 5345.0 17 6096.0 18 6630.0 19 7731.0 20 8941.0 21 10679.0 22 12906.0 23 15612.0 24 19114.0 25 23218.0 26 27830.0 27 34312.0 28 42283.0 29 52280.0 30 64964.0 31 83946.0 32 111780.0 33 158618.0 34 263734.0 35 640274.0 36 1415984.0 37 812337.0 38 111701.0 39 9916.0 40 73.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.31279328624738 24.460098055702364 13.561085619564695 23.666023038485562 2 30.461775366942568 24.85653345183993 19.12190014918419 25.559791032033313 3 29.38618875922796 19.939395940848996 21.46367909470185 29.210736205221195 4 30.598113910330316 19.86390276324469 19.94650267424091 29.59148065218408 5 31.115173144158653 21.11634373003688 20.090080085082583 27.678403040721882 6 29.321916304131967 19.468675951756747 17.54212730707877 33.66728043703252 7 32.572677695160124 18.974649843789837 19.483849692971404 28.968822768078635 8 28.368458133682388 19.88562175339099 19.864322872020253 31.881597240906366 9 30.55573492392195 18.20171783170175 19.246542737308104 31.9960045070682 10-14 30.440683995970563 19.673558109853904 19.524380069749814 30.361377824425723 15-19 30.677549390093084 19.220707738561693 19.335027763792045 30.76671510755318 20-24 30.59753066168835 19.261989058336287 19.34422532055714 30.796254959418224 25-29 30.78778635559347 19.361188643302537 19.25871128786745 30.592313713236543 30-34 30.88416582052635 19.133629011834326 19.08851042071886 30.89369474692047 35-39 30.76441148194369 19.184283132708778 19.207769031192186 30.843536354155347 40-44 30.853499982972515 19.258108795167775 19.14933793093723 30.73905329092248 45-49 30.994370983073043 19.079667658432268 18.993975550271895 30.93198580822279 50-54 30.772857806804627 19.12804554829784 19.171091036331003 30.92800560856653 55-59 30.889740598177973 19.210152432514068 19.114605186236115 30.785501783071844 60-64 30.99503 19.021469999999997 18.99253 30.99097 65-69 30.793954334608202 19.105810244403028 19.15872546664696 30.941509954341807 70-74 30.91645 19.19962 19.10888 30.775049999999997 75-79 31.018808176321862 19.025305089043297 18.984979389392407 30.970907345242438 80-84 30.82282862480884 19.112221813042567 19.132347452031603 30.932602110116996 85-89 30.915369999999996 19.210745000000003 19.11301 30.760875 90-94 31.032735 19.00685 18.95183 31.008585 95-99 30.850627439913552 19.099561773076015 19.135852346467075 30.91395844054336 100-101 31.034547416444074 19.310679237848753 19.085445003245134 30.569328342462043 >>END_MODULE >>Per base GC content warn #Base %GC 1 61.978816324732946 2 56.02156639897588 3 58.59692496444916 4 60.1895945625144 5 58.793576184880536 6 62.98919674116449 7 61.54150046323876 8 60.25005537458876 9 62.55173943099015 10-14 60.80206182039628 15-19 61.44426449764626 20-24 61.39378562110658 25-29 61.38010006883001 30-34 61.777860567446815 35-39 61.607947836099044 40-44 61.592553273895 45-49 61.92635679129583 50-54 61.70086341537115 55-59 61.67524238124982 60-64 61.986 65-69 61.73546428895001 70-74 61.6915 75-79 61.98971552156431 80-84 61.75543073492583 85-89 61.676244999999994 90-94 62.04132 95-99 61.76458588045691 100-101 61.60387575890611 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 128.0 1 78.5 2 32.5 3 32.5 4 27.5 5 32.0 6 33.5 7 34.5 8 45.5 9 52.5 10 57.5 11 60.0 12 67.0 13 70.0 14 91.5 15 127.0 16 143.5 17 186.0 18 243.0 19 291.0 20 335.0 21 409.0 22 487.5 23 582.0 24 710.5 25 856.5 26 1015.5 27 1219.0 28 1487.5 29 1745.0 30 2059.0 31 2386.5 32 2804.5 33 3335.0 34 3835.0 35 4337.5 36 4900.5 37 5622.0 38 6467.5 39 7286.0 40 8326.0 41 9790.0 42 11506.0 43 13529.5 44 16127.0 45 19605.0 46 24231.5 47 29994.0 48 36845.5 49 45315.5 50 55534.0 51 66729.0 52 79086.5 53 92491.5 54 106960.0 55 121764.5 56 135512.0 57 148985.5 58 161044.0 59 171310.5 60 181166.0 61 189036.0 62 194405.5 63 197559.5 64 198085.5 65 196203.5 66 191156.0 67 183036.5 68 171979.5 69 158578.0 70 142786.5 71 125123.5 72 107024.5 73 88994.5 74 71966.5 75 56472.0 76 43025.5 77 31632.0 78 22419.0 79 15339.5 80 9972.0 81 6174.0 82 3713.0 83 2150.0 84 1207.0 85 706.0 86 458.0 87 307.5 88 224.5 89 178.0 90 131.0 91 97.0 92 81.0 93 69.0 94 54.5 95 42.5 96 36.0 97 22.5 98 19.0 99 18.5 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.09759999999999999 2 0.08995 3 0.0727 4 0.060425 5 0.05005 6 0.04405 7 0.078525 8 0.112125 9 0.11245000000000001 10-14 0.04561 15-19 0.05687999999999999 20-24 0.019775 25-29 0.021814999999999998 30-34 0.041205 35-39 0.025115000000000002 40-44 0.014584999999999999 45-49 0.008295 50-54 0.024365 55-59 0.01805 60-64 0.0 65-69 4.1999999999999996E-4 70-74 0.0 75-79 0.0017350000000000002 80-84 0.003175 85-89 0.0 90-94 0.0 95-99 0.00158 100-101 0.0041 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.24533439928048756 #Duplication Level Relative count 1 100.0 2 0.16880046482739275 3 0.004007132696199235 4 5.008915870249043E-4 5 5.008915870249043E-4 6 0.0 7 0.0 8 0.001502674761074713 9 0.0 10++ 0.003005349522149426 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 317010 3.192249 3.6817932 10-14 AAAAA 328695 3.142965 3.9954503 1 >>END_MODULE