##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002006_Sedgewick_ACTGAT_L002_R2_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.54177325 34.0 31.0 34.0 31.0 34.0 2 32.69015775 34.0 31.0 34.0 31.0 34.0 3 32.75029275 34.0 31.0 34.0 31.0 34.0 4 36.12984925 37.0 37.0 37.0 35.0 37.0 5 36.13321025 37.0 37.0 37.0 35.0 37.0 6 36.13998275 37.0 37.0 37.0 35.0 37.0 7 36.134589 37.0 37.0 37.0 35.0 37.0 8 36.12050225 37.0 37.0 37.0 35.0 37.0 9 37.9012495 39.0 39.0 39.0 35.0 39.0 10-14 38.1938159 39.4 38.6 39.4 35.4 39.4 15-19 39.3507929 41.0 39.8 41.0 36.4 41.0 20-24 39.1579497 41.0 39.0 41.0 35.8 41.0 25-29 38.80397995 40.4 38.6 41.0 35.0 41.0 30-34 38.1647954 40.0 37.4 41.0 34.0 41.0 35-39 37.24642235 39.0 35.2 41.0 33.0 41.0 40-44 36.2561603 37.0 35.0 40.0 32.0 41.0 45-49 35.30157225 35.2 35.0 39.0 31.0 41.0 50-54 33.96414725 34.8 33.8 36.2 29.4 39.2 55-59 34.06237335 35.0 35.0 35.0 31.0 38.2 60-64 33.63986655 35.0 34.6 35.0 30.8 36.4 65-69 33.3166376 35.0 34.0 35.0 30.0 35.0 70-74 33.0579211 35.0 34.0 35.0 29.4 35.0 75-79 32.8054747 35.0 33.4 35.0 29.0 35.0 80-84 32.52842869999999 35.0 33.0 35.0 28.0 35.0 85-89 32.260373300000005 35.0 33.0 35.0 27.0 35.0 90-94 31.90659985 35.0 33.0 35.0 26.6 35.0 95-99 31.35802235 35.0 33.0 35.0 24.2 35.0 100-101 30.314337125 34.0 31.5 35.0 20.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 5077.0 3 1045.0 4 1444.0 5 1683.0 6 2205.0 7 2698.0 8 3361.0 9 3882.0 10 4174.0 11 4479.0 12 4477.0 13 4567.0 14 4698.0 15 4869.0 16 5140.0 17 5812.0 18 6454.0 19 7417.0 20 8593.0 21 10498.0 22 12632.0 23 15456.0 24 18762.0 25 23223.0 26 28409.0 27 34901.0 28 43328.0 29 53648.0 30 68105.0 31 86537.0 32 115095.0 33 160588.0 34 259622.0 35 608578.0 36 1405917.0 37 844286.0 38 117714.0 39 10534.0 40 92.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.30855459755639 24.440858735516287 13.550571152804586 23.70001551412274 2 30.437307456525915 24.88313674285023 19.100963991912078 25.578591808711774 3 29.340076347350386 19.972997885919824 21.439803821375254 29.247121945354532 4 30.606714621088926 19.860605532293086 19.892994305788097 29.639685540829895 5 31.124770299740835 21.077959672964454 20.136861896751064 27.66040813054365 6 29.32457478111544 19.448780788109538 17.50533416150685 33.72131026926817 7 32.57431794493899 18.996618885183267 19.502709797823954 28.926353372053786 8 28.30757953702248 19.855641217957125 19.92138174265964 31.915397502360747 9 30.56742867038576 18.20888418190791 19.238249870619196 31.985437277087136 10-14 30.432207823810913 19.653067650742475 19.539930684972433 30.37479384047418 15-19 30.68265355687249 19.179531442503023 19.346850182577054 30.790964818047435 20-24 30.582599551892276 19.230045451383543 19.348385977547807 30.838969019176375 25-29 30.729654848152084 19.37388015444011 19.274198303223162 30.622266694184653 30-34 30.884528607833218 19.123339866885217 19.08145136892452 30.910680156357046 35-39 30.723039181366797 19.177354124551275 19.21772589085931 30.88188080322262 40-44 30.845391930665688 19.267898378752466 19.147787448657827 30.738922241924016 45-49 30.98182341477152 19.03046711617942 19.00175587585384 30.985953593195227 50-54 30.806075667119398 19.11643888565366 19.151566355114767 30.925919092112174 55-59 30.88218461916491 19.227931508433684 19.13126893492105 30.75861493748035 60-64 31.003805 19.03158 18.97296 30.991655 65-69 30.79345 19.115455 19.138175 30.95292 70-74 30.91181 19.21178 19.107315 30.769095 75-79 30.997660296958387 19.031734741255164 18.97034466144806 31.00026030033839 80-84 30.811337339146093 19.109397929551715 19.14283387077346 30.936430860528723 85-89 30.907235 19.220695 19.105195 30.766875 90-94 31.057015 19.001595 18.95126 30.99013 95-99 30.860447996382373 19.090934136552733 19.111879294688674 30.93673857237622 100-101 31.007735271271997 19.335915673768103 19.076414960141143 30.57993409481876 >>END_MODULE >>Per base GC content warn #Base %GC 1 62.00857011167913 2 56.01589926523769 3 58.587198292704926 4 60.24640016191882 5 58.78517843028448 6 63.04588505038361 7 61.500671316992786 8 60.22297703938323 9 62.55286594747289 10-14 60.80700166428509 15-19 61.47361837491992 20-24 61.421568571068654 25-29 61.351921542336726 30-34 61.79520876419027 35-39 61.604919984589415 40-44 61.58431417258971 45-49 61.96777700796674 50-54 61.731994759231576 55-59 61.64079955664526 60-64 61.99546 65-69 61.74636999999999 70-74 61.680904999999996 75-79 61.997920597296776 80-84 61.74776819967482 85-89 61.674110000000006 90-94 62.047145 95-99 61.79718656875859 100-101 61.58766936609076 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 14.0 1 10.0 2 6.5 3 6.5 4 9.0 5 9.0 6 7.5 7 10.5 8 15.0 9 18.5 10 23.5 11 31.0 12 44.0 13 60.5 14 79.0 15 88.0 16 108.5 17 141.0 18 181.5 19 227.5 20 279.5 21 363.5 22 453.0 23 537.0 24 643.5 25 754.0 26 919.0 27 1214.0 28 1460.5 29 1681.5 30 2033.0 31 2396.5 32 2727.0 33 3262.0 34 3805.0 35 4219.5 36 4874.0 37 5577.0 38 6293.0 39 7294.0 40 8420.5 41 9762.5 42 11470.5 43 13628.5 44 16346.0 45 19812.5 46 24344.5 47 30120.5 48 36987.0 49 45450.0 50 55804.5 51 67252.5 52 79623.5 53 93011.0 54 107267.5 55 121909.5 56 135939.0 57 148773.0 58 161068.5 59 172156.0 60 181310.0 61 188997.0 62 194339.0 63 196869.0 64 197703.0 65 195900.0 66 190937.0 67 183231.0 68 172001.5 69 158039.0 70 142220.5 71 125067.5 72 106909.0 73 88911.5 74 72189.5 75 56619.0 76 42927.0 77 31541.5 78 22375.5 79 15232.0 80 9858.5 81 6182.5 82 3708.0 83 2147.5 84 1251.5 85 740.0 86 476.5 87 298.5 88 199.5 89 167.5 90 145.0 91 121.5 92 90.5 93 66.5 94 48.5 95 43.0 96 39.5 97 29.0 98 22.0 99 16.5 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.25217500000000004 2 0.209225 3 0.193 4 0.1969 5 0.209625 6 0.10145 7 0.1217 8 0.1377 9 0.1011 10-14 0.05919 15-19 0.038095000000000004 20-24 0.017345 25-29 0.016905 30-34 0.04416 35-39 0.01676 40-44 0.0091 45-49 0.00432 50-54 0.00703 55-59 0.007835 60-64 0.0 65-69 0.0 70-74 0.0 75-79 1.3000000000000002E-4 80-84 0.002815 85-89 0.0 90-94 0.0 95-99 7.549999999999999E-4 100-101 2.75E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.24737878439564956 #Duplication Level Relative count 1 100.0 2 0.19338386697594726 3 0.004007955792247612 4 5.009944740309515E-4 5 0.0 6 0.0 7 0.0 8 5.009944740309515E-4 9 0.0 10++ 5.009944740309515E-4 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 308050 3.1024559 3.7643092 10-14 AAAAA 314745 3.0202682 3.959673 1 >>END_MODULE