##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002006_Sedgewick_ACTGAT_L002_R1_004.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.8511915 34.0 31.0 34.0 31.0 34.0 2 33.0751405 34.0 31.0 34.0 31.0 34.0 3 33.10847875 34.0 33.0 34.0 31.0 34.0 4 36.481892 37.0 37.0 37.0 35.0 37.0 5 36.41785225 37.0 37.0 37.0 35.0 37.0 6 36.38783675 37.0 37.0 37.0 35.0 37.0 7 36.38370375 37.0 37.0 37.0 35.0 37.0 8 36.3695115 37.0 37.0 37.0 35.0 37.0 9 38.1670955 39.0 39.0 39.0 37.0 39.0 10-14 38.43569725 39.4 39.0 39.4 37.0 39.4 15-19 39.59272905 41.0 40.0 41.0 37.0 41.0 20-24 39.3816207 41.0 39.2 41.0 36.4 41.0 25-29 38.97335005 40.0 38.4 41.0 35.2 41.0 30-34 38.301162950000005 40.0 37.4 41.0 34.2 41.0 35-39 37.3473214 39.0 35.4 40.6 33.0 41.0 40-44 36.5098721 37.4 35.0 40.0 32.8 41.0 45-49 35.80948985 35.2 35.0 39.2 33.0 41.0 50-54 34.90591355 35.0 35.0 36.8 31.6 40.0 55-59 34.208319800000005 35.0 34.6 35.2 31.0 38.2 60-64 33.69048665 35.0 34.0 35.0 30.8 36.4 65-69 33.31509905 35.0 33.6 35.0 30.0 35.0 70-74 33.05721 35.0 33.0 35.0 29.4 35.0 75-79 32.44245185 34.4 32.6 35.0 28.2 35.0 80-84 32.76664515 35.0 33.0 35.0 29.0 35.0 85-89 32.48255640000001 35.0 33.0 35.0 28.8 35.0 90-94 32.1299757 35.0 33.0 35.0 27.0 35.0 95-99 31.64576925 35.0 33.0 35.0 26.2 35.0 100-101 30.463425375 34.0 31.0 35.0 22.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 21.0 3 6.0 4 35.0 5 66.0 6 220.0 7 652.0 8 1440.0 9 2307.0 10 3010.0 11 3418.0 12 3635.0 13 3923.0 14 4117.0 15 4508.0 16 5122.0 17 5599.0 18 6233.0 19 6759.0 20 7432.0 21 8457.0 22 9917.0 23 12462.0 24 15694.0 25 20123.0 26 26002.0 27 32783.0 28 41495.0 29 52275.0 30 65936.0 31 85091.0 32 112668.0 33 157755.0 34 259182.0 35 651274.0 36 1476665.0 37 800425.0 38 105822.0 39 7446.0 40 25.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.515734264860086 24.69011751257956 13.703558879547732 23.090589343012624 2 30.13515 24.593899999999998 19.942975 25.327975000000002 3 28.92645 20.02375 22.18 28.8698 4 30.3545 20.239425 20.574925 28.83115 5 31.002775 21.110775 20.29365 27.5928 6 29.3799 19.501925 17.718425 33.39975 7 32.485975 19.16015 19.617675000000002 28.7362 8 28.327975 19.8401 19.998250000000002 31.833675 9 30.5564 18.18545 19.367775 31.890375 10-14 30.439321527185832 19.645948575138288 19.5829784995742 30.331751398101677 15-19 30.682160000000003 19.169365 19.3586 30.789875 20-24 30.60291 19.20336 19.36663 30.8271 25-29 30.748812026378758 19.34511030592524 19.305468266342306 30.6006094013537 30-34 30.90280407625147 19.122539175734993 19.117906753441375 30.856749994572162 35-39 30.74429327712471 19.158452003927295 19.261135183984322 30.836119534963665 40-44 30.861817306167282 19.25187958120105 19.165713150838304 30.720589961793365 45-49 30.9838 19.03518 19.044505 30.936514999999996 50-54 30.794179999999997 19.09478 19.182740000000003 30.928299999999997 55-59 30.90155 19.198494999999998 19.15671 30.743245 60-64 31.006485719677602 18.99680293118577 19.00960741211387 30.98710393702276 65-69 30.816419796069734 19.083589722069824 19.165501740749185 30.934488741111256 70-74 30.920565 19.18155 19.122985 30.7749 75-79 31.037100000000002 19.00194 18.985155000000002 30.975805 80-84 30.838341393181608 19.054885389112584 19.16014602581968 30.94662719188613 85-89 30.93107633014923 19.193379430652843 19.113398055630366 30.762146183567555 90-94 31.042374904761626 18.98218410236116 18.986666202449157 30.988774790428053 95-99 30.884405899053117 19.034021750893086 19.121474991313686 30.960097358740114 100-101 31.04981489090395 19.270846289261698 19.097356121850375 30.581982697983985 >>END_MODULE >>Per base GC content warn #Base %GC 1 61.6063236078727 2 55.463125000000005 3 57.79625000000001 4 59.18565 5 58.595575 6 62.77965 7 61.222175 8 60.16165 9 62.446775 10-14 60.771072925287505 15-19 61.472035000000005 20-24 61.43001 25-29 61.34942142773245 30-34 61.75955407082363 35-39 61.58041281208838 40-44 61.58240726796065 45-49 61.920315 50-54 61.722480000000004 55-59 61.644794999999995 60-64 61.993589656700365 65-69 61.75090853718099 70-74 61.695465000000006 75-79 62.012904999999996 80-84 61.78496858506774 85-89 61.6932225137168 90-94 62.03114969518968 95-99 61.84450325779323 100-101 61.63179758888793 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 10.0 1 6.0 2 4.0 3 5.0 4 3.0 5 3.5 6 3.0 7 5.5 8 10.0 9 11.5 10 17.0 11 24.5 12 38.5 13 49.5 14 57.5 15 79.0 16 95.5 17 114.0 18 164.0 19 201.0 20 237.5 21 319.0 22 423.0 23 538.0 24 653.5 25 765.5 26 908.5 27 1112.0 28 1410.5 29 1722.0 30 1978.0 31 2325.0 32 2767.5 33 3238.0 34 3774.0 35 4380.5 36 5025.0 37 5667.0 38 6407.0 39 7296.0 40 8341.0 41 9643.5 42 11365.0 43 13580.0 44 16339.0 45 19983.0 46 24659.5 47 30329.5 48 37384.0 49 45979.5 50 56114.5 51 67535.5 52 80135.0 53 93991.5 54 108449.5 55 122812.0 56 136296.5 57 149483.0 58 161668.5 59 171772.0 60 180815.5 61 188569.0 62 194236.0 63 197454.0 64 197573.0 65 195091.0 66 190284.0 67 182218.0 68 171049.5 69 157714.5 70 141984.0 71 124770.5 72 106973.5 73 88971.5 74 72360.0 75 56890.5 76 42989.5 77 31439.5 78 21992.5 79 14879.0 80 9702.0 81 6033.0 82 3616.5 83 1984.0 84 1062.0 85 629.0 86 371.5 87 213.5 88 136.0 89 89.0 90 57.0 91 50.0 92 39.5 93 18.5 94 14.5 95 9.0 96 7.0 97 4.5 98 2.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.006449999999999999 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 1.1999999999999999E-4 15-19 0.0 20-24 0.0 25-29 0.005144999999999999 30-34 0.052289999999999996 35-39 0.017705 40-44 0.00166 45-49 0.0 50-54 0.0 55-59 0.0 60-64 0.034995000000000005 65-69 0.032985 70-74 0.0 75-79 0.0 80-84 0.005355 85-89 0.026725000000000002 90-94 0.046855 95-99 0.015139999999999999 100-101 0.0015375 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.16048635865951655 #Duplication Level Relative count 1 100.0 2 0.14872606361669738 3 0.002503805784792885 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0010015223139171541 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content pass >>END_MODULE