FastQCFastQC Report
Thu 4 Oct 2012
002005_Nocton-Soy_GAGTGG_L003_R2_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename 002005_Nocton-Soy_GAGTGG_L003_R2_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 4000000
Filtered Sequences 0
Sequence length 101
%GC 63

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
AAAAA 247140 3.2631094 3.8114133 60-64
TTTTT 241730 3.260375 3.693029 10-14
GATCG 1278535 3.0951788 4.3655705 1
CGATC 1266550 3.078987 3.4239419 1
ATCGA 712055 3.0428405 3.7392218 2
TCGAT 704495 3.0233836 3.3033895 5