##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002005_Nocton-Soy_GAGTGG_L003_R1_003.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 63 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.77650725 34.0 31.0 34.0 31.0 34.0 2 33.01145825 34.0 31.0 34.0 31.0 34.0 3 33.0475885 34.0 31.0 34.0 31.0 34.0 4 36.44198025 37.0 37.0 37.0 35.0 37.0 5 36.37930025 37.0 37.0 37.0 35.0 37.0 6 36.3393265 37.0 37.0 37.0 35.0 37.0 7 36.3314995 37.0 37.0 37.0 35.0 37.0 8 36.3104005 37.0 37.0 37.0 35.0 37.0 9 38.093708 39.0 39.0 39.0 37.0 39.0 10-14 38.352544050000006 39.4 38.4 39.4 36.2 39.4 15-19 39.47617285 41.0 39.6 41.0 36.6 41.0 20-24 39.189975 40.4 39.0 41.0 35.6 41.0 25-29 38.6784196 40.0 38.0 41.0 34.8 41.0 30-34 37.81830145 39.8 36.4 41.0 33.2 41.0 35-39 36.66637015 38.2 35.0 40.2 32.0 41.0 40-44 35.64922875 35.8 35.0 39.4 31.0 41.0 45-49 35.075318349999996 35.0 35.0 38.0 31.0 40.8 50-54 34.23419115 35.0 34.4 35.8 30.6 39.4 55-59 33.623308550000004 35.0 34.0 35.0 30.0 37.4 60-64 33.15008385 35.0 33.0 35.0 28.8 35.6 65-69 32.75129745 35.0 33.0 35.0 28.8 35.0 70-74 32.4550476 35.0 33.0 35.0 26.8 35.0 75-79 31.792935200000006 34.4 32.2 35.0 26.2 35.0 80-84 31.987071799999995 35.0 33.0 35.0 27.0 35.0 85-89 31.6619468 35.0 33.0 35.0 24.6 35.0 90-94 31.186981299999996 35.0 32.6 35.0 23.8 35.0 95-99 30.52671755 34.8 31.4 35.0 20.2 35.0 100-101 29.066788375 33.5 29.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 38.0 3 11.0 4 42.0 5 147.0 6 421.0 7 1150.0 8 2704.0 9 4130.0 10 5156.0 11 5772.0 12 6000.0 13 5997.0 14 6576.0 15 7208.0 16 7736.0 17 8686.0 18 9485.0 19 10387.0 20 11164.0 21 12524.0 22 14799.0 23 17787.0 24 22004.0 25 27462.0 26 34371.0 27 42096.0 28 52257.0 29 63776.0 30 79631.0 31 101695.0 32 134262.0 33 188257.0 34 315168.0 35 764906.0 36 1377732.0 37 556022.0 38 94034.0 39 8389.0 40 18.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 35.65973958437506 18.785577134628078 16.848485909154547 28.70619737184231 2 32.38735 21.915225 19.851225 25.846200000000003 3 29.72255 19.700125 20.349999999999998 30.227325 4 31.965549999999997 18.671925 18.919175 30.443350000000002 5 32.13715 18.858275 18.928725 30.07585 6 31.272575000000003 18.0275 17.574975000000002 33.12495 7 33.297175 17.932225 17.992025 30.778575000000004 8 30.6321 18.540824999999998 18.75645 32.070625 9 31.422175000000003 17.472075 18.445125 32.660624999999996 10-14 31.682475 18.33692 18.367695 31.61291 15-19 31.79597 18.043305 18.22947 31.931254999999997 20-24 31.7121269947493 18.10078881213875 18.269750341240588 31.91733385187136 25-29 31.88143106173819 18.187209597212135 18.177479503803237 31.753879837246433 30-34 31.9779114958959 18.00395290928961 18.020857785118068 31.997277809696424 35-39 31.86840245407093 18.075367463302427 18.137515844011563 31.918714238615074 40-44 32.00227903019715 18.07823953667386 18.062264325002307 31.857217108126683 45-49 32.07081 17.893305 17.960285000000002 32.0756 50-54 31.933157107118703 17.9936241957556 18.080235611852256 31.992983085273448 55-59 32.05767265664332 18.053565338365757 18.007085131528836 31.88167687346209 60-64 32.10395259099671 17.88913469645489 17.928044964844204 32.0788677477042 65-69 31.938387611697138 18.00553341846926 18.04548371343969 32.010595256393906 70-74 32.100085 18.033475 17.95904 31.907400000000003 75-79 32.137515 17.88515 17.880615 32.09672 80-84 32.001924612573454 17.963224038095007 18.012249452952076 32.022601896379456 85-89 32.11648786884786 17.989665495242743 17.96931957966779 31.9245270562416 90-94 32.20949832208403 17.83506467687974 17.853409144459455 32.10202785657678 95-99 32.07949420922286 17.91944567596671 17.959830049594373 32.04123006521606 100-101 32.41955227953385 17.930643790515113 17.820243059110265 31.829560870840766 >>END_MODULE >>Per base GC content warn #Base %GC 1 64.36593695621737 2 58.23355 3 59.949875 4 62.4089 5 62.212999999999994 6 64.397525 7 64.07575 8 62.702725 9 64.08279999999999 10-14 63.295385 15-19 63.727225 20-24 63.62946084662067 25-29 63.635310898984635 30-34 63.97518930559233 35-39 63.787116692686006 40-44 63.859496138323834 45-49 64.14641 50-54 63.92614019239215 55-59 63.9393495301054 60-64 64.1828203387009 65-69 63.94898286809105 70-74 64.007485 75-79 64.234235 80-84 64.02452650895292 85-89 64.04101492508947 90-94 64.3115261786608 95-99 64.12072427443893 100-101 64.24911315037463 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 5.0 1 4.0 2 3.0 3 4.5 4 4.0 5 5.0 6 7.0 7 4.5 8 4.0 9 7.0 10 10.0 11 21.5 12 28.0 13 33.0 14 40.5 15 54.5 16 70.5 17 91.5 18 133.0 19 162.5 20 215.0 21 317.0 22 420.5 23 517.5 24 632.5 25 852.5 26 1133.0 27 1393.0 28 1787.5 29 2189.5 30 2639.5 31 3250.5 32 3914.0 33 4674.0 34 5527.5 35 6367.5 36 7217.5 37 8009.0 38 8936.5 39 9856.0 40 10897.0 41 12009.0 42 12950.0 43 14137.0 44 15741.0 45 17601.5 46 19720.0 47 22523.5 48 26336.5 49 30499.5 50 35165.5 51 41219.5 52 48064.5 53 55741.0 54 64282.5 55 73787.0 56 83760.0 57 94452.5 58 106410.0 59 119362.5 60 133078.5 61 147693.0 62 162425.5 63 176137.5 64 189003.5 65 199717.0 66 207488.0 67 211817.0 68 212032.5 69 207055.0 70 197171.5 71 183023.5 72 165066.0 73 144397.5 74 122057.0 75 100372.0 76 79436.0 77 60096.0 78 43990.5 79 30883.5 80 20510.5 81 12751.0 82 7606.0 83 4403.5 84 2507.0 85 1435.5 86 835.5 87 562.5 88 400.0 89 282.0 90 188.0 91 138.0 92 94.5 93 54.0 94 40.5 95 26.5 96 12.5 97 6.5 98 3.5 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0060 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 9.05E-4 25-29 9.599999999999999E-4 30-34 0.05842 35-39 0.013485 40-44 0.001325 45-49 0.0 50-54 0.0016350000000000002 55-59 4.45E-4 60-64 0.03924 65-69 0.038285 70-74 0.0 75-79 0.0 80-84 0.011045 85-89 0.029075 90-94 0.05161 95-99 0.010830000000000001 100-101 6.625E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.19394957311098696 #Duplication Level Relative count 1 100.0 2 0.16177177658466224 3 0.0035058898950236397 4 0.001502524240724417 5 0.0 6 5.008414135748057E-4 7 0.0 8 0.0 9 0.0 10++ 0.0010016828271496114 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 240460 3.2014272 3.931539 1 TTTTT 238785 3.166957 3.5046804 9 GATCG 1276135 3.084881 4.524531 1 CGATC 1264745 3.0751624 3.3657978 6 ATCGA 711480 3.042432 3.8564522 2 TCGAT 708020 3.0253146 3.362485 5 >>END_MODULE