##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002005_Nocton-Soy_GAGTGG_L003_R1_002.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 63 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.79925 34.0 31.0 34.0 31.0 34.0 2 33.02474875 34.0 31.0 34.0 31.0 34.0 3 33.072181 34.0 33.0 34.0 31.0 34.0 4 36.4556235 37.0 37.0 37.0 35.0 37.0 5 36.38487625 37.0 37.0 37.0 35.0 37.0 6 36.34390775 37.0 37.0 37.0 35.0 37.0 7 36.337349 37.0 37.0 37.0 35.0 37.0 8 36.311033 37.0 37.0 37.0 35.0 37.0 9 38.10040575 39.0 39.0 39.0 37.0 39.0 10-14 38.3737011 39.4 38.6 39.4 36.6 39.4 15-19 39.47623195 41.0 39.6 41.0 36.6 41.0 20-24 39.195075499999994 40.6 39.0 41.0 35.8 41.0 25-29 38.657462800000005 40.0 38.0 41.0 34.8 41.0 30-34 37.7922775 39.8 36.4 41.0 33.2 41.0 35-39 36.6417901 38.2 35.0 40.2 31.6 41.0 40-44 35.588553 35.8 35.0 39.6 31.0 41.0 45-49 35.01054945 35.0 35.0 38.0 31.0 40.8 50-54 34.15627545 35.0 34.2 35.8 30.4 39.4 55-59 33.51852235 35.0 33.8 35.0 29.8 37.4 60-64 33.001185250000006 35.0 33.0 35.0 27.6 35.6 65-69 32.60498815 35.0 33.0 35.0 27.8 35.0 70-74 32.27041855 35.0 33.0 35.0 26.2 35.0 75-79 31.58790315 34.4 32.2 35.0 25.8 35.0 80-84 31.775010349999995 35.0 33.0 35.0 25.6 35.0 85-89 31.404829900000003 35.0 33.0 35.0 24.0 35.0 90-94 30.843825849999995 35.0 31.8 35.0 22.0 35.0 95-99 30.13534775 34.6 31.0 35.0 14.2 35.0 100-101 28.678301375 33.5 29.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 43.0 3 24.0 4 48.0 5 148.0 6 440.0 7 1211.0 8 2920.0 9 4565.0 10 6055.0 11 6499.0 12 6929.0 13 6962.0 14 7384.0 15 7994.0 16 8975.0 17 9911.0 18 10851.0 19 11647.0 20 12748.0 21 13954.0 22 16554.0 23 19687.0 24 23974.0 25 30001.0 26 36241.0 27 44342.0 28 53255.0 29 66094.0 30 82005.0 31 104204.0 32 137667.0 33 193023.0 34 317883.0 35 744960.0 36 1341514.0 37 562309.0 38 97824.0 39 9134.0 40 21.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 35.630981762211924 18.791149911002556 16.877786092595848 28.700082234189672 2 32.406400000000005 21.91745 19.8755 25.800650000000005 3 29.731524999999998 19.714525 20.316125 30.237825 4 31.929275 18.63485 18.9222 30.513675000000003 5 32.107225 18.8398 18.95735 30.095625 6 31.3156 18.03255 17.53855 33.1133 7 33.34435 17.941025 17.94155 30.773075 8 30.595850000000002 18.596 18.789575 32.018575 9 31.42195 17.464850000000002 18.477574999999998 32.635625000000005 10-14 31.678435 18.358525 18.37222 31.590819999999997 15-19 31.796535 18.055475 18.212955 31.935035 20-24 31.70885343030499 18.13166994303342 18.25459619688121 31.904880429780384 25-29 31.86787159102506 18.186221403925845 18.178786335894973 31.767120669154124 30-34 31.977202500790504 18.0144621979579 18.015863088924554 31.992472212327037 35-39 31.862525598293693 18.05581490714602 18.155562612363692 31.926096882196592 40-44 31.980753862070443 18.09484575093874 18.068550015972946 31.85585037101787 45-49 32.060244999999995 17.922620000000002 17.9574 32.059735 50-54 31.913522965496615 18.007313770577888 18.089774566324564 31.989388697600933 55-59 32.03875 18.038809999999998 18.021145 31.901295 60-64 32.12740635001059 17.875727216185307 17.921047636458304 32.075818797345796 65-69 31.954224277729594 18.004613887079817 18.021460777457982 32.01970105773261 70-74 32.104275 18.0251 17.957155 31.91347 75-79 32.15518 17.877365 17.869365000000002 32.09809 80-84 32.01293481814575 17.962782144046223 17.995936291630084 32.02834674617795 85-89 32.13774005923985 17.991464515904457 17.940500878034964 31.930294546820733 90-94 32.248444395973394 17.814420116644037 17.825346115017144 32.11178937236543 95-99 32.14459144242054 17.870912777772695 17.934759861606643 32.04973591820012 100-101 32.54591532140725 17.92061294429061 17.75874931124518 31.77472242305696 >>END_MODULE >>Per base GC content warn #Base %GC 1 64.3310639964016 2 58.20705 3 59.96935 4 62.442949999999996 5 62.20285 6 64.4289 7 64.117425 8 62.614425 9 64.057575 10-14 63.269255 15-19 63.731570000000005 20-24 63.613733860085375 25-29 63.63499226017918 30-34 63.96967471311754 35-39 63.78862248049029 40-44 63.83660423308831 45-49 64.11998 50-54 63.90291166309755 55-59 63.940045 60-64 64.20322514735639 65-69 63.9739253354622 70-74 64.017745 75-79 64.25327 80-84 64.0412815643237 85-89 64.06803460606059 90-94 64.36023376833882 95-99 64.19432736062066 100-101 64.32063774446422 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 4.0 1 2.5 2 1.0 3 1.5 4 3.0 5 4.5 6 3.0 7 2.0 8 8.0 9 12.5 10 15.0 11 22.5 12 31.0 13 41.0 14 52.5 15 68.5 16 81.5 17 103.0 18 123.5 19 148.5 20 214.0 21 280.5 22 368.5 23 505.0 24 688.0 25 916.5 26 1109.0 27 1348.0 28 1698.0 29 2095.0 30 2638.5 31 3361.5 32 4024.5 33 4667.5 34 5477.5 35 6280.5 36 7094.0 37 8115.0 38 9091.5 39 9963.5 40 10913.5 41 12049.0 42 13175.0 43 14383.0 44 15833.0 45 17678.5 46 19990.0 47 22811.0 48 26279.5 49 30304.5 50 35336.0 51 41272.5 52 48005.0 53 55759.5 54 64230.0 55 73534.0 56 84160.0 57 95316.0 58 107116.0 59 120014.0 60 133725.0 61 147737.0 62 161574.5 63 175316.0 64 188255.5 65 199065.5 66 206716.0 67 210884.5 68 210469.0 69 205758.5 70 196817.0 71 182425.0 72 164547.0 73 144087.5 74 121861.0 75 100205.5 76 79530.5 77 60762.0 78 44683.0 79 31114.5 80 20687.5 81 13352.5 82 8213.0 83 4909.0 84 2939.5 85 1779.5 86 1184.5 87 823.0 88 536.0 89 378.0 90 283.0 91 191.0 92 118.0 93 91.5 94 63.0 95 40.0 96 28.5 97 17.0 98 6.0 99 1.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.011175000000000001 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.00102 25-29 9.15E-4 30-34 0.06359999999999999 35-39 0.017750000000000002 40-44 0.0027949999999999997 45-49 0.0 50-54 9.65E-4 55-59 0.0 60-64 0.034025 65-69 0.0409 70-74 0.0 75-79 0.0 80-84 0.01251 85-89 0.02676 90-94 0.054900000000000004 95-99 0.011095 100-101 7.0E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.199941017399868 #Duplication Level Relative count 1 100.0 2 0.16027326591839086 3 0.006010247471939657 4 0.0010017079119899429 5 5.008539559949714E-4 6 0.0010017079119899429 7 5.008539559949714E-4 8 5.008539559949714E-4 9 0.0 10++ 0.0010017079119899429 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 242030 3.2284496 3.8417292 70-74 TTTTT 241575 3.2128778 3.5229297 90-94 GATCG 1278885 3.0916295 4.387749 1 CGATC 1261590 3.0682743 3.4519513 1 ATCGA 708180 3.0307052 3.7287533 2 TCGAT 704850 3.014673 3.4300034 5 >>END_MODULE