##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002005_Nocton-Soy_GAGTGG_L002_R2_009.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 683570 Filtered Sequences 0 Sequence length 101 %GC 63 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.19121816346534 33.0 31.0 34.0 30.0 34.0 2 32.36308644323186 34.0 31.0 34.0 30.0 34.0 3 32.420035987536025 34.0 31.0 34.0 30.0 34.0 4 35.862002428427225 37.0 35.0 37.0 35.0 37.0 5 35.8826762438375 37.0 35.0 37.0 35.0 37.0 6 35.84875872258876 37.0 36.0 37.0 35.0 37.0 7 35.811072750413274 37.0 36.0 37.0 35.0 37.0 8 35.8213730854192 37.0 36.0 37.0 35.0 37.0 9 37.53038606141288 39.0 38.0 39.0 35.0 39.0 10-14 37.6926576649063 39.4 38.0 39.4 35.0 39.4 15-19 38.76149158096464 40.4 38.0 41.0 35.0 41.0 20-24 38.498802756118614 40.0 38.0 41.0 33.8 41.0 25-29 38.013850520063784 40.0 37.6 41.0 33.0 41.0 30-34 37.21947949734482 39.4 35.8 41.0 31.8 41.0 35-39 36.0860342027883 37.8 35.0 40.2 30.4 41.0 40-44 35.07301783284813 35.6 34.4 39.4 29.2 41.0 45-49 34.18189651389031 35.0 33.8 37.6 28.2 40.4 50-54 32.94339775004754 34.8 32.6 35.2 26.0 39.2 55-59 33.13069414983103 35.0 33.0 35.0 27.0 37.0 60-64 32.7890118056673 35.0 33.0 35.0 27.0 35.6 65-69 32.49230656699387 35.0 33.0 35.0 26.4 35.0 70-74 32.15211843702913 35.0 33.0 35.0 26.0 35.0 75-79 31.9341419313311 35.0 33.0 35.0 25.4 35.0 80-84 31.635777755021433 35.0 33.0 35.0 24.0 35.0 85-89 31.30114779759206 35.0 32.6 35.0 24.0 35.0 90-94 30.820373334113555 35.0 31.6 35.0 21.6 35.0 95-99 30.176933159734922 34.8 31.0 35.0 14.8 35.0 100-101 28.813856664277253 33.5 29.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 880.0 3 235.0 4 357.0 5 514.0 6 657.0 7 910.0 8 1162.0 9 1320.0 10 1392.0 11 1388.0 12 1384.0 13 1386.0 14 1330.0 15 1385.0 16 1467.0 17 1650.0 18 1723.0 19 1982.0 20 2378.0 21 2842.0 22 3442.0 23 4171.0 24 4999.0 25 6121.0 26 7284.0 27 8637.0 28 10441.0 29 12522.0 30 15618.0 31 19349.0 32 24715.0 33 33808.0 34 53882.0 35 123813.0 36 220001.0 37 90360.0 38 16184.0 39 1873.0 40 8.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 35.580684900641714 18.730156872269514 16.69441656449437 28.994741662594404 2 32.83848927967931 22.33294075477495 18.894684096179308 25.933885869366435 3 30.250618132872965 19.678863513335575 19.523927960088365 30.546590393703095 4 32.338904592192044 18.288739853812977 18.193495906412217 31.17885964758276 5 32.3144941721054 18.76805901191328 18.770692427321393 30.14675438865993 6 31.355125078452918 18.02420080435269 17.240329992348556 33.38034412484584 7 33.3675675833838 17.81453814485477 17.818927151271495 30.99896712048993 8 30.678747463456958 18.601949645140007 18.608825926213115 32.110476965189925 9 31.602210429752137 17.521328130600875 18.18644685268337 32.69001458696362 10-14 31.67842944716346 18.41375240256535 18.25270847274235 31.65510967752884 15-19 31.831408319861897 18.074508627815288 18.17220519497619 31.921877857346626 20-24 31.728572055531984 18.16130023260237 18.208318094708662 31.901809617156985 25-29 31.869508609213394 18.23485524525652 18.13031584183039 31.765320303699696 30-34 31.98139035173827 18.05856228441888 18.015903226552073 31.944144137290774 35-39 31.883817543933564 18.11426603597428 18.11438306926235 31.887533350829813 40-44 31.98329359100019 18.164957502523514 18.019222610705558 31.832526295770734 45-49 32.04148806998552 17.993299881504456 17.92272920110596 32.04248284740407 50-54 31.912526193397827 18.101722546890645 18.044786102123968 31.94096515758756 55-59 31.96425588140377 18.15200144886448 17.99064265273276 31.893100016998993 60-64 32.03174510291558 17.974135787117632 17.89148148689966 32.10263762306713 65-69 31.91703507781253 18.109268161377248 18.036678243212798 31.93701851759742 70-74 32.01503869391576 18.118466287285866 17.985429436634142 31.881065582164226 75-79 32.02867299618181 18.02173881241131 17.927147183170707 32.02244100823617 80-84 31.920710388109484 18.077943736559533 18.036777506327077 31.964568369003903 85-89 32.01849115672133 18.127653349327794 17.968723027634333 31.885132466316545 90-94 32.09441608028439 17.977266410170138 17.878900478370905 32.04941703117457 95-99 31.940927776233597 18.08353204499905 18.002750266980705 31.97278991178665 100-101 32.14250186520766 18.193528095147535 17.943370832540925 31.720599207103884 >>END_MODULE >>Per base GC content pass #Base %GC 1 64.57542656323612 2 58.77237514904574 3 60.79720852657605 4 63.51776423977481 5 62.46124856076533 6 64.73546920329876 7 64.36653470387374 8 62.78922442864688 9 64.29222501671575 10-14 63.333539124692294 15-19 63.75328617720852 20-24 63.630381672688976 25-29 63.634828912913086 30-34 63.92553448902905 35-39 63.77135089476338 40-44 63.81581988677092 45-49 64.08397091738959 50-54 63.853491350985394 55-59 63.857355898402766 60-64 64.1343827259827 65-69 63.85405359540995 70-74 63.89610427607999 75-79 64.05111400441798 80-84 63.8852787571134 85-89 63.90362362303787 90-94 64.14383311145896 95-99 63.91371768802024 100-101 63.863101072311544 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 26.0 1 16.5 2 5.0 3 3.5 4 4.5 5 4.0 6 4.0 7 4.5 8 3.0 9 3.5 10 3.5 11 3.0 12 3.5 13 7.0 14 12.0 15 16.0 16 18.5 17 18.0 18 23.0 19 29.5 20 43.0 21 61.0 22 72.0 23 99.5 24 126.0 25 158.5 26 206.5 27 243.5 28 295.5 29 368.5 30 467.5 31 573.5 32 665.5 33 797.0 34 936.0 35 1056.0 36 1225.5 37 1413.0 38 1563.5 39 1716.0 40 1878.5 41 2054.5 42 2242.0 43 2443.0 44 2652.0 45 3001.5 46 3409.5 47 3830.0 48 4440.0 49 5185.0 50 6053.0 51 6973.5 52 8030.0 53 9381.5 54 10821.0 55 12536.0 56 14385.0 57 16101.0 58 18241.5 59 20561.5 60 22833.5 61 25228.0 62 27663.5 63 30100.5 64 32290.0 65 34084.5 66 35560.5 67 36448.5 68 36352.5 69 35450.0 70 33901.0 71 31368.5 72 28248.5 73 24764.0 74 20950.5 75 17336.0 76 13721.5 77 10330.0 78 7475.5 79 5074.0 80 3273.5 81 2015.5 82 1170.5 83 641.5 84 330.0 85 177.0 86 94.5 87 50.0 88 36.5 89 30.0 90 21.0 91 13.5 92 9.0 93 8.0 94 5.5 95 3.5 96 2.5 97 2.5 98 1.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.012288426935061516 2 0.008045993826528373 3 0.008777447810758225 4 0.009070029404450166 5 0.006875667451760609 6 0.005705341076992846 7 0.006436795061222698 8 0.008923738607604197 9 0.012142136138215544 10-14 0.004359465746009919 15-19 0.003657269921149261 20-24 0.0 25-29 0.0 30-34 0.0015506824465672865 35-39 5.559050280146877E-4 40-44 0.0 45-49 0.0 50-54 1.1703263747677634E-4 55-59 2.9258159369194084E-5 60-64 0.0 65-69 5.851631873838816E-4 70-74 0.0 75-79 0.0 80-84 0.0 85-89 0.0 90-94 0.0 95-99 0.0 100-101 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 683570.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.13841003347823336 #Duplication Level Relative count 1 100.0 2 0.07255332669512092 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0010007355406223574 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 45810 3.4816828 4.3133655 7 TTTTT 40940 3.2263167 3.7302454 85-89 GATCG 219395 3.1045282 4.5094767 1 CGATC 214925 3.0537195 3.5355055 1 TCGAT 120360 3.0157146 3.6338053 5 ATCGA 120620 3.000415 3.5954852 3 >>END_MODULE