FastQCFastQC Report
Thu 4 Oct 2012
002005_Nocton-Soy_GAGTGG_L002_R2_005.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename 002005_Nocton-Soy_GAGTGG_L002_R2_005.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 4000000
Filtered Sequences 0
Sequence length 101
%GC 63

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
AAAAA 276150 3.6259496 4.4291 1
TTTTT 250465 3.3781915 3.7736642 95-97
GATCG 1279520 3.0947874 4.352106 1
CGATC 1267415 3.0800853 3.5239618 6
ATCGA 709640 3.026799 3.7905617 2
TCGAT 705775 3.026522 3.4719558 5