FastQCFastQC Report
Thu 4 Oct 2012
002005_Nocton-Soy_GAGTGG_L002_R2_003.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename 002005_Nocton-Soy_GAGTGG_L002_R2_003.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 4000000
Filtered Sequences 0
Sequence length 101
%GC 63

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
AAAAA 249515 3.305965 4.187427 1
TTTTT 238170 3.2295785 3.5246031 10-14
GATCG 1275450 3.0879166 4.284147 1
CGATC 1267265 3.081872 3.4252007 6
ATCGA 712630 3.0496607 3.784747 2
TCGAT 705370 3.032605 3.3680158 5