FastQCFastQC Report
Thu 4 Oct 2012
002005_Nocton-Soy_GAGTGG_L002_R2_002.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename 002005_Nocton-Soy_GAGTGG_L002_R2_002.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 4000000
Filtered Sequences 0
Sequence length 101
%GC 63

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
AAAAA 251300 3.321426 4.030442 1
TTTTT 238260 3.2318451 3.5816755 10-14
GATCG 1278835 3.095444 4.448722 1
CGATC 1265850 3.077747 3.4790466 6
TCGAT 709300 3.0488193 3.4685376 3
ATCGA 711555 3.0426831 3.6181128 2