FastQCFastQC Report
Thu 4 Oct 2012
002005_Nocton-Soy_GAGTGG_L002_R2_001.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename 002005_Nocton-Soy_GAGTGG_L002_R2_001.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 4000000
Filtered Sequences 0
Sequence length 101
%GC 63

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[OK] Per base GC content

Per base GC content graph

[WARN] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
AAAAA 247700 3.2681289 3.9821367 1
TTTTT 237645 3.220514 3.5530453 10-14
GATCG 1276740 3.090655 4.5637226 1
CGATC 1265845 3.0762491 3.4415448 6
ATCGA 711960 3.042411 3.7682538 2
TCGAT 704445 3.026454 3.503078 5