##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002005_Nocton-Soy_GAGTGG_L002_R2_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 63 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.54485725 34.0 31.0 34.0 31.0 34.0 2 32.697884 34.0 31.0 34.0 31.0 34.0 3 32.74876275 34.0 31.0 34.0 31.0 34.0 4 36.13043075 37.0 37.0 37.0 35.0 37.0 5 36.13105725 37.0 37.0 37.0 35.0 37.0 6 36.12566575 37.0 37.0 37.0 35.0 37.0 7 36.121055 37.0 37.0 37.0 35.0 37.0 8 36.1036645 37.0 37.0 37.0 35.0 37.0 9 37.88185225 39.0 39.0 39.0 35.0 39.0 10-14 38.169543 39.4 38.6 39.4 35.4 39.4 15-19 39.302551199999996 41.0 39.6 41.0 36.0 41.0 20-24 39.0704329 41.0 39.0 41.0 35.6 41.0 25-29 38.63662225 40.2 38.2 41.0 34.8 41.0 30-34 37.85725705 39.8 36.6 41.0 33.4 41.0 35-39 36.77471805 38.2 35.0 40.6 32.4 41.0 40-44 35.67451875 36.0 35.0 39.6 31.0 41.0 45-49 34.7134863 35.0 34.6 38.0 30.4 40.6 50-54 33.44973825 34.8 33.0 35.2 28.4 39.2 55-59 33.6970871 35.0 34.4 35.0 30.0 37.4 60-64 33.357024749999994 35.0 34.0 35.0 30.0 35.6 65-69 33.06116695 35.0 34.0 35.0 29.0 35.0 70-74 32.7873203 35.0 33.2 35.0 29.0 35.0 75-79 32.496975750000004 35.0 33.0 35.0 27.4 35.0 80-84 32.16791685 35.0 33.0 35.0 27.0 35.0 85-89 31.851827550000003 35.0 33.0 35.0 25.8 35.0 90-94 31.429297399999996 35.0 33.0 35.0 24.0 35.0 95-99 30.794676349999996 35.0 32.4 35.0 21.4 35.0 100-101 29.655054749999998 34.0 30.5 35.0 9.5 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 4840.0 3 1135.0 4 1670.0 5 2101.0 6 2742.0 7 3463.0 8 4189.0 9 4775.0 10 5213.0 11 5574.0 12 5745.0 13 5607.0 14 5716.0 15 6011.0 16 6273.0 17 7121.0 18 8154.0 19 9151.0 20 10744.0 21 12721.0 22 15359.0 23 18537.0 24 22374.0 25 27168.0 26 32790.0 27 40066.0 28 48330.0 29 59450.0 30 74471.0 31 95269.0 32 125906.0 33 175189.0 34 286801.0 35 687300.0 36 1399882.0 37 649077.0 38 114383.0 39 14631.0 40 72.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 35.58907902658012 18.70430734636366 16.700885770182964 29.005727856873254 2 32.78763104883914 22.285736760713444 18.86509557117616 26.06153661927126 3 30.288334253828825 19.605351648062637 19.556033127818626 30.55028097028991 4 32.356571749193435 18.225707873274153 18.27157184938781 31.1461485281446 5 32.211027190824275 18.814199583090225 18.700740602307107 30.274032623778385 6 31.357594497968673 17.96553772786447 17.262943622797934 33.413924151368924 7 33.39667753330076 17.809423734651215 17.83903497881407 30.95486375323396 8 30.664661908620783 18.54441247546312 18.64833044060366 32.14259517531244 9 31.511160917618724 17.4393904964779 18.26278282683185 32.78666575907153 10-14 31.70431370320244 18.33119739749359 18.29212418018787 31.672364719116096 15-19 31.794634653120163 18.065256895505634 18.170026865249092 31.970081586125104 20-24 31.748740375820155 18.105887694427047 18.212805661991496 31.9325662677613 25-29 31.86085756328208 18.214407073140542 18.119221724503078 31.805513639074302 30-34 31.958219501684372 18.024450325381565 17.987223843356645 32.03010632957742 35-39 31.84770936139684 18.09698661851748 18.095206328152123 31.960097691933555 40-44 31.998689488213344 18.095943583987715 18.020817175705087 31.884549752093854 45-49 32.05515182261845 17.959523768807884 17.894636153837 32.09068825473666 50-54 31.91344128371174 18.03304255845887 18.03583774951018 32.01767840831921 55-59 31.987655921718833 18.091737227103707 17.995740396929243 31.924866454248217 60-64 32.084734999999995 17.95647 17.86224 32.096555 65-69 31.904244999999996 18.050835000000003 18.014015 32.030905 70-74 32.03223 18.09123 17.958385 31.918155 75-79 32.08744331804848 17.932109208347434 17.879724137627587 32.100723335976504 80-84 31.951486628402076 18.018190139291864 18.00243975892018 32.027883473385884 85-89 32.053145 18.073165 17.945485 31.928205 90-94 32.14141 17.903305 17.838945 32.11634 95-99 31.99557576947281 18.003119221522628 17.979109055852486 32.02219595315208 100-101 32.210933711901276 18.13626120988158 17.855997763992455 31.796807314224683 >>END_MODULE >>Per base GC content pass #Base %GC 1 64.59480688345337 2 58.849167668110404 3 60.83861522411873 4 63.50272027733803 5 62.485059814602664 6 64.7715186493376 7 64.35154128653473 8 62.80725708393322 9 64.29782667669025 10-14 63.37667842231854 15-19 63.76471623924527 20-24 63.68130664358146 25-29 63.66637120235637 30-34 63.9883258312618 35-39 63.8078070533304 40-44 63.8832392403072 45-49 64.14584007735512 50-54 63.93111969203095 55-59 63.91252237596705 60-64 64.18129 65-69 63.93514999999999 70-74 63.950385 75-79 64.18816665402498 80-84 63.97937010178796 85-89 63.981350000000006 90-94 64.25775 95-99 64.01777172262489 100-101 64.00774102612597 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 8.0 1 9.0 2 8.5 3 6.0 4 7.5 5 10.0 6 9.0 7 8.5 8 11.5 9 10.5 10 14.5 11 28.0 12 32.5 13 37.0 14 50.5 15 67.0 16 93.0 17 121.5 18 145.0 19 171.5 20 247.0 21 331.5 22 411.5 23 536.5 24 715.0 25 895.5 26 1129.0 27 1422.5 28 1783.0 29 2213.0 30 2712.0 31 3294.0 32 3953.0 33 4774.5 34 5646.5 35 6429.5 36 7215.0 37 8114.5 38 9038.0 39 9947.5 40 10880.5 41 11829.5 42 13031.5 43 14439.0 44 15908.0 45 17590.5 46 19756.0 47 22546.0 48 25970.5 49 29923.5 50 34762.0 51 40532.0 52 46962.5 53 54552.5 54 63434.0 55 72798.0 56 82823.5 57 94149.5 58 106285.0 59 118779.5 60 132227.5 61 147084.5 62 162026.5 63 176178.0 64 189128.5 65 199982.0 66 208496.0 67 212863.5 68 212141.5 69 207380.5 70 198295.5 71 183735.0 72 165937.0 73 145726.0 74 123241.0 75 101262.0 76 80062.5 77 60491.5 78 43856.5 79 30356.5 80 19922.5 81 12455.5 82 7492.0 83 4359.5 84 2418.0 85 1350.0 86 837.5 87 527.5 88 362.5 89 282.0 90 215.0 91 179.0 92 141.5 93 107.5 94 79.5 95 60.0 96 42.5 97 26.5 98 24.5 99 20.0 100 12.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.25065 2 0.20657499999999998 3 0.189625 4 0.194 5 0.206225 6 0.10235000000000001 7 0.12240000000000001 8 0.137575 9 0.1023 10-14 0.05942 15-19 0.03815 20-24 0.016805 25-29 0.016125 30-34 0.044275 35-39 0.01631 40-44 0.00853 45-49 0.00403 50-54 0.006834999999999999 55-59 0.007115 60-64 0.0 65-69 0.0 70-74 0.0 75-79 1.35E-4 80-84 0.002415 85-89 0.0 90-94 0.0 95-99 6.9E-4 100-101 3.3749999999999996E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.27134126535977704 #Duplication Level Relative count 1 100.0 2 0.19792157295038432 3 0.008518143645965908 4 0.0020042690931684486 5 0.0010021345465842243 6 5.010672732921121E-4 7 0.0015032018198763365 8 5.010672732921121E-4 9 0.0 10++ 0.0015032018198763365 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position AAAAA 247700 3.2681289 3.9821367 1 TTTTT 237645 3.220514 3.5530453 10-14 GATCG 1276740 3.090655 4.5637226 1 CGATC 1265845 3.0762491 3.4415448 6 ATCGA 711960 3.042411 3.7682538 2 TCGAT 704445 3.026454 3.503078 5 >>END_MODULE